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Items: 1 to 20 of 24

1.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
2.
Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells
Samudyata, Paulo P. Amaral, Pär G. Engström, Samuel C. Robson, Michael L. Nielsen, Tony Kouzarides, Gonçalo Castelo-Branco
Exp Cell Res. Author manuscript; available in PMC 2020 Aug 1.
Published in final edited form as: Exp Cell Res. 2019 Aug 1; 381(1): 129–138. Published online 2019 May 9. doi: 10.1016/j.yexcr.2019.05.006
PMCID:
PMC6994247
AbstractArticlePDF–1.6M
3.
Dosage-dependent requirements of Magoh for cortical interneuron generation and survival
Charles J. Sheehan, John J. McMahon, Lucas D. Serdar, Debra L. Silver
Development. 2020 Jan 1; 147(1): dev182295. Published online 2020 Jan 13. doi: 10.1242/dev.182295
PMCID:
PMC6983725
AbstractArticle
4.
Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing
Lorea Blazquez, Warren Emmett, Rupert Faraway, Jose Mario Bello Pineda, Simon Bajew, Andre Gohr, Nejc Haberman, Christopher R. Sibley, Robert K. Bradley, Manuel Irimia, Jernej Ule
Mol Cell. 2018 Nov 1; 72(3): 496–509.e9. doi: 10.1016/j.molcel.2018.09.033
PMCID:
PMC6224609
AbstractArticlePDF–3.7M
5.
Mouse models of Casc3 reveal developmental functions distinct from other components of the exon junction complex
Hanqian Mao, Hannah E. Brown, Debra L. Silver
RNA. 2017 Jan; 23(1): 23–31. doi: 10.1261/rna.058826.116
PMCID:
PMC5159646
AbstractArticlePDF–980K
6.
Haploinsufficiency for Core Exon Junction Complex Components Disrupts Embryonic Neurogenesis and Causes p53-Mediated Microcephaly
Hanqian Mao, John J. McMahon, Yi-Hsuan Tsai, Zefeng Wang, Debra L. Silver
PLoS Genet. 2016 Sep; 12(9): e1006282. Published online 2016 Sep 12. doi: 10.1371/journal.pgen.1006282
PMCID:
PMC5019403
AbstractArticlePDF–21M
7.
Prolonged mitosis of neural progenitors alters cell fate in the developing brain
Louis-Jan Pilaz, John J. McMahon, Emily E. Miller, Ashley L. Lennox, Aussie Suzuki, Edward Salmon, Debra L. Silver
Neuron. Author manuscript; available in PMC 2017 Jan 6.
Published in final edited form as: Neuron. 2016 Jan 6; 89(1): 83–99. doi: 10.1016/j.neuron.2015.12.007
PMCID:
PMC4706996
AbstractArticlePDF–4.0M
8.
Generation of a Magoh conditional allele in mice
John J. McMahon, Lei Shi, Debra L. Silver
Genesis. Author manuscript; available in PMC 2015 Aug 1.
Published in final edited form as: Genesis. 2014 Aug; 52(8): 752–758. Published online 2014 May 9. doi: 10.1002/dvg.22788
PMCID:
PMC4111959
AbstractArticlePDF–291K
9.
The Central Role of EED in the Orchestration of Polycomb Group Complexes
Qi Cao, Xiaoju Wang, Meng Zhao, Rendong Yang, Rohit Malik, Yuanyuan Qiao, Anton Poliakov, Anastasia K. Yocum, Yong Li, Wei Chen, Xuhong Cao, Xia Jiang, Arun Dahiya, Clair Harris, Felix Y. Feng, Sundeep Kalantry, Zhaohui S. Qin, Saravana M. Dhanasekaran, Arul M. Chinnaiyan
Nat Commun. Author manuscript; available in PMC 2014 Jul 24.
Published in final edited form as: Nat Commun. 2014; 5: 3127. doi: 10.1038/ncomms4127
PMCID:
PMC4073494
AbstractArticlePDF–2.1M
10.
Developmental and Regional Expression and Localization of mRNAs Encoding Proteins Involved in RNA Translocation
Shabana Islam, Robert K. Montgomery, John J. Fialkovich, Richard J. Grand
J Histochem Cytochem. 2005 Dec; 53(12): 1501–1509. doi: 10.1369/jhc.5A6655.2005
PMCID:
PMC3957543
AbstractArticlePDF–177K
11.
Two mammalian MAGOH genes contribute to exon junction complex composition and nonsense-mediated decay
Kusum K Singh, Laurens Wachsmuth, Andreas E Kulozik, Niels H Gehring
RNA Biol. 2013 Aug 1; 10(8): 1291–1298. Published online 2013 Jul 23. doi: 10.4161/rna.25827
PMCID:
PMC3817150
AbstractArticlePDF–1.3M
12.
The EJC component Magoh regulates proliferation and expansion of neural crest-derived melanocytes
Debra L. Silver, Karen E. Leeds, Hun-Way Hwang, Emily E. Miller, William J. Pavan
Dev Biol. Author manuscript; available in PMC 2014 Mar 15.
Published in final edited form as: Dev Biol. 2013 Mar 15; 375(2): 172–181. Published online 2013 Jan 18. doi: 10.1016/j.ydbio.2013.01.004
PMCID:
PMC3710740
AbstractArticlePDF–3.9M
13.
A conditional knockout resource for the genome–wide study of mouse gene function
William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley
Nature. Author manuscript; available in PMC 2013 Feb 14.
Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163
PMCID:
PMC3572410
AbstractArticlePDF–1.1M
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
Assembly, disassembly and recycling: The dynamics of exon junction complexes
Fulvia Bono, Niels H Gehring
RNA Biol. 2011 Jan-Feb; 8(1): 24–29. Published online 2011 Jan 1. doi: 10.4161/rna.8.1.13618
PMCID:
PMC3127076
AbstractArticlePDF–965K
16.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
17.
A sensitized mutagenesis screen identifies Gli3 as a modifier of Sox10 neurocristopathy
Ivana Matera, Dawn E. Watkins-Chow, Stacie K. Loftus, Ling Hou, Arturo Incao, Debra L. Silver, Cecelia Rivas, Eugene C. Elliott, Laura L. Baxter, William J. Pavan
Hum Mol Genet. 2008 Jul 15; 17(14): 2118–2131. Published online 2008 Apr 7. doi: 10.1093/hmg/ddn110
PMCID:
PMC2902284
AbstractArticlePDF–1.7M
18.
The exon junction complex component Magoh controls brain size by regulating neural stem cell division
Debra L. Silver, Dawn E. Watkins-Chow, Karisa C. Schreck, Tarran J. Pierfelice, Denise M. Larson, Anthony J. Burnetti, Hung-Jiun Liaw, Kyungjae Myung, Christopher A. Walsh, Nicholas Gaiano, William J. Pavan
Nat Neurosci. Author manuscript; available in PMC 2010 Nov 1.
Published in final edited form as: Nat Neurosci. 2010 May; 13(5): 551–558. Published online 2010 Apr 4. doi: 10.1038/nn.2527
PMCID:
PMC2860667
AbstractArticlePDF–4.0M
19.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
20.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M

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