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Items: 1 to 20 of 45

1.
Structural insights into the binding of bS1 to the ribosome
Gaetano D’Urso, Sophie Chat, Reynald Gillet, Emmanuel Giudice
Nucleic Acids Res. 2023 Apr 24; 51(7): 3410–3419. Published online 2023 Feb 25. doi: 10.1093/nar/gkad126
PMCID:
PMC10123108
AbstractArticlePDF–3.3M
2.
An RNA pseudoknot is essential for standby-mediated translation of the tisB toxin mRNA in Escherichia coli
Cédric Romilly, Anne Lippegaus, E Gerhart H Wagner
Nucleic Acids Res. 2020 Dec 2; 48(21): 12336–12347. Published online 2020 Nov 24. doi: 10.1093/nar/gkaa1139
PMCID:
PMC7708055
AbstractArticlePDF–6.0M
3.
Translation inhibition from a distance: the small RNA SgrS silences a ribosomal protein S1-dependent enhancer
Muhammad S. Azam, Carin K. Vanderpool
Mol Microbiol. Author manuscript; available in PMC 2021 Sep 1.
Published in final edited form as: Mol Microbiol. 2020 Sep; 114(3): 391–408. Published online 2020 May 2. doi: 10.1111/mmi.14514
PMCID:
PMC7502529
AbstractArticlePDF–2.7M
4.
Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure
Paul E Lund, Surajit Chatterjee, May Daher, Nils G Walter
Nucleic Acids Res. 2020 Feb 28; 48(4): 2107–2125. Published online 2019 Dec 13. doi: 10.1093/nar/gkz1166
PMCID:
PMC7038950
AbstractArticlePDF–5.8M
5.
Structural dynamics of protein S1 on the 70S ribosome visualized by ensemble cryo-EM
Anna B. Loveland, Andrei A. Korostelev
Methods. Author manuscript; available in PMC 2019 Mar 15.
Published in final edited form as: Methods. 2018 Mar 15; 137: 55–66. Published online 2017 Dec 14. doi: 10.1016/j.ymeth.2017.12.004
PMCID:
PMC5866760
AbstractArticlePDF–1.2M
6.
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck
Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473
PMCID:
PMC5454533
AbstractArticlePDF–1.5M
7.
Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation
Mélodie Duval, Alexey Korepanov, Olivier Fuchsbauer, Pierre Fechter, Andrea Haller, Attilio Fabbretti, Laurence Choulier, Ronald Micura, Bruno P. Klaholz, Pascale Romby, Mathias Springer, Stefano Marzi
PLoS Biol. 2013 Dec; 11(12): e1001731. Published online 2013 Dec 10. doi: 10.1371/journal.pbio.1001731
PMCID:
PMC3858243
AbstractArticlePDF–1.4M
8.
Ribosomal protein S1 unwinds double-stranded RNA in multiple steps
Xiaohui Qu, Laura Lancaster, Harry F. Noller, Carlos Bustamante, Ignacio Tinoco, Jr.
Proc Natl Acad Sci U S A. 2012 Sep 4; 109(36): 14458-14463. Published online 2012 Aug 20. doi: 10.1073/pnas.1208950109
PMCID:
PMC3437903
AbstractArticlePDF–698K
9.
Direct Interaction of the N-Terminal Domain of Ribosomal Protein S1 with Protein S2 in Escherichia coli
Konstantin Byrgazov, Salim Manoharadas, Anna C. Kaberdina, Oliver Vesper, Isabella Moll
PLoS One. 2012; 7(3): e32702. Published online 2012 Mar 7. doi: 10.1371/journal.pone.0032702
PMCID:
PMC3296737
AbstractArticlePDF–864K
10.
YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome
Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme
J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198
PMCID:
PMC3285355
AbstractArticlePDF–1.2M
11.
Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding
Branislav Večerek, Mads Beich-Frandsen, Armin Resch, Udo Bläsi
Nucleic Acids Res. 2010 Mar; 38(4): 1284–1293. Published online 2009 Dec 6. doi: 10.1093/nar/gkp1125
PMCID:
PMC2831331
AbstractArticlePDF–664K
12.
Probing the relationship between Gram-negative and Gram-positive S1 proteins by sequence analysis
Philippe Salah, Marco Bisaglia, Pascale Aliprandi, Marc Uzan, Christina Sizun, François Bontems
Nucleic Acids Res. 2009 Sep; 37(16): 5578–5588. Published online 2009 Jul 15. doi: 10.1093/nar/gkp547
PMCID:
PMC2760812
AbstractArticlePDF–2.5M
13.
Concurrent Nucleation of 16S Folding and Induced Fit in 30 S Ribosome Assembly
Tadepalli Adilakshmi, Deepti L. Bellur, Sarah A. Woodson
Nature. Author manuscript; available in PMC 2009 Oct 30.
Published in final edited form as: Nature. 2008 Oct 30; 455(7217): 1268–1272. Published online 2008 Sep 10. doi: 10.1038/nature07298
PMCID:
PMC2720798
AbstractArticlePDF–1.0M
14.
A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo
Leonid V. Aseev, Alexandrina A. Levandovskaya, Ludmila S. Tchufistova, Nadezda V. Scaptsova, Irina V. Boni
RNA. 2008 Sep; 14(9): 1882–1894. doi: 10.1261/rna.1099108
PMCID:
PMC2525966
AbstractArticlePDF–550K
15.
Dissecting RNA chaperone activity
Lukas Rajkowitsch, Renée Schroeder
RNA. 2007 Dec; 13(12): 2053–2060. doi: 10.1261/rna.671807
PMCID:
PMC2080586
AbstractArticlePDF–408K
16.
The Deleterious Effect of an Insertion Sequence Removing the Last Twenty Percent of the Essential Escherichia coli rpsA Gene Is Due to mRNA Destabilization, Not Protein Truncation
Patricia Skorski, Florence Proux, Chainez Cheraiti, Marc Dreyfus, Sylvie Hermann-Le Denmat
J Bacteriol. 2007 Sep; 189(17): 6205–6212. Published online 2007 Jul 6. doi: 10.1128/JB.00445-07
PMCID:
PMC1951931
AbstractArticlePDF–381K
17.
Activation of RegB endoribonuclease by S1 ribosomal protein requires an 11 nt conserved sequence
Sylvain Durand, Graziella Richard, Marco Bisaglia, Soumaya Laalami, François Bontems, Marc Uzan
Nucleic Acids Res. 2006 Dec; 34(22): 6549–6560. Published online 2006 Nov 27. doi: 10.1093/nar/gkl911
PMCID:
PMC1702504
AbstractArticlePDF–2.2M
18.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K
19.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
20.
Structural basis for mRNA and tRNA positioning on the ribosome
Veysel Berk, Wen Zhang, Raj D. Pai, Jamie H. D. Cate
Proc Natl Acad Sci U S A. 2006 Oct 24; 103(43): 15830–15834. Published online 2006 Oct 12. doi: 10.1073/pnas.0607541103
Correction in:
Proc Natl Acad Sci U S A. 2006 Dec 26; 103(52): 19931.
PMCID:
PMC1635088
AbstractArticlePDF–828K

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