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Select item 67378931.

Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria

Claire L. Hews, Timothy Cho, Gary Rowley, Tracy L. Raivio

Front Cell Infect Microbiol. 2019; 9: 313. Published online 2019 Sep 4. doi: 10.3389/fcimb.2019.00313

PMCID:: PMC6737893

Abstract Article PDF–1.5M

Select item 66488962.

Structures and mechanism of transcription initiation by bacterial ECF factors

Chengli Fang, Lingting Li, Liqiang Shen, Jing Shi, Sheng Wang, Yu Feng, Yu Zhang

Nucleic Acids Res. 2019 Jul 26; 47(13): 7094–7104. Published online 2019 May 27. doi: 10.1093/nar/gkz470

PMCID:: PMC6648896

Abstract Article PDF–4.0M

Select item 59499863.

Cryo-EM structure of Escherichia coli σ⁷⁰ RNA polymerase and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation

Anoop Narayanan, Frank S. Vago, Kunpeng Li, M. Zuhaib Qayyum, Dinesh Yernool, Wen Jiang, Katsuhiko S. Murakami

J Biol Chem. 2018 May 11; 293(19): 7367–7375. Published online 2018 Mar 26. doi: 10.1074/jbc.RA118.002161

PMCID:: PMC5949986

Abstract Article PDF–2.8M

Select item 54932964.

The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

Tomohiro Shimada, Kan Tanaka, Akira Ishihama

PLoS One. 2017; 12(6): e0179181. Published online 2017 Jun 30. doi: 10.1371/journal.pone.0179181

PMCID:: PMC5493296

Abstract Article PDF–4.7M

Select item 54545335.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 46740766.

Regulation of Transcript Elongation

Georgiy A. Belogurov, Irina Artsimovitch

Annu Rev Microbiol. Author manuscript; available in PMC 2016 Oct 15.

Published in final edited form as: Annu Rev Microbiol. 2015 Oct 15; 69: 49–69. Published online 2015 Jun 24. doi: 10.1146/annurev-micro-091014-104047

PMCID:: PMC4674076

Abstract Article PDF–1.2M

Select item 36109857.

X-ray Crystal Structure of Escherichia coli RNA Polymerase σ⁷⁰ Holoenzyme

Katsuhiko S. Murakami

J Biol Chem. 2013 Mar 29; 288(13): 9126–9134. Published online 2013 Feb 6. doi: 10.1074/jbc.M112.430900

PMCID:: PMC3610985

Abstract Article PDF–2.3M

Select item 31629348.

Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior

Christof Francke, Tom Groot Kormelink, Yanick Hagemeijer, Lex Overmars, Vincent Sluijter, Roy Moezelaar, Roland J Siezen

BMC Genomics. 2011; 12: 385. Published online 2011 Aug 1. doi: 10.1186/1471-2164-12-385

PMCID:: PMC3162934

Abstract Article PDF–1.6M

Select item 31471639.

Structural Coupling between RNA Polymerase Composition and DNA Supercoiling in Coordinating Transcription: a Global Role for the Omega Subunit?

Marcel Geertz, Andrew Travers, Sanja Mehandziska, Patrick Sobetzko, Sarath Chandra Janga, Nobuo Shimamoto, Georgi Muskhelishvili

mBio. 2011 Jul-Aug; 2(4): e00034-11. Published online 2011 Aug 2. doi: 10.1128/mBio.00034-11

PMCID:: PMC3147163

Abstract Article PDF–1.0M

Select item 284378110.

An Improved Procedure for the Purification of the Escherichia coli RNA Polymerase Omega Subunit

Catherine E. Vrentas, Tamas Gaal, Richard R. Burgess, Richard L. Gourse

Protein Expr Purif. Author manuscript; available in PMC 2011 Jun 1.

Published in final edited form as: Protein Expr Purif. 2010 Jun; 71(2): 190–194. Published online 2009 Dec 4. doi: 10.1016/j.pep.2009.11.009

PMCID:: PMC2843781

Abstract Article PDF–1.3M

Select item 277570211.

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex

Brian P. Hudson, Joel Quispe, Samuel Lara-González, Younggyu Kim, Helen M. Berman, Eddy Arnold, Richard H. Ebright, Catherine L. Lawson

Proc Natl Acad Sci U S A. 2009 Nov 24; 106(47): 19830–19835. Published online 2009 Nov 10. doi: 10.1073/pnas.0908782106

PMCID:: PMC2775702

Abstract Article PDF–2.3M

Select item 231778212.

Still looking for the magic spot: the crystallographically-defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation

Catherine E. Vrentas, Tamas Gaal, Melanie B. Berkmen, Steven T. Rutherford, Shanil P. Haugen, Wilma Ross, Richard L. Gourse

J Mol Biol. Author manuscript; available in PMC 2009 Mar 21.

Published in final edited form as: J Mol Biol. 2008 Mar 21; 377(2): 551–564. Published online 2008 Jan 26. doi: 10.1016/j.jmb.2008.01.042

Correction in:: volume 379 on page 1130

PMCID:: PMC2317782

Abstract Article PDF–2.7M

Select item 229217713.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520015.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405