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Items: 1 to 20 of 27

1.
Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature
Hermann Hämmerle, Branislav Večerek, Armin Resch, Udo Bläsi
RNA Biol. 2013 Dec 1; 10(12): 1834–1841. Published online 2013 Nov 13. doi: 10.4161/rna.27100
PMCID:
PMC3917986
AbstractArticlePDF–845K
2.
Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress
Stefan M. Gaida, Mohab A. Al-Hinai, Dinesh C. Indurthi, Sergios A. Nicolaou, Eleftherios T. Papoutsakis
Nucleic Acids Res. 2013 Oct; 41(18): 8726–8737. Published online 2013 Jul 27. doi: 10.1093/nar/gkt651
PMCID:
PMC3794604
AbstractArticlePDF–3.2M
3.
Structural flexibility of RNA as molecular basis for Hfq chaperone function
Euripedes de Almeida Ribeiro, Jr, Mads Beich-Frandsen, Petr V. Konarev, Weifeng Shang, Branislav Večerek, Georg Kontaxis, Hermann Hämmerle, Herwig Peterlik, Dmitri I. Svergun, Udo Bläsi, Kristina Djinović-Carugo
Nucleic Acids Res. 2012 Sep; 40(16): 8072–8084. Published online 2012 Jun 18. doi: 10.1093/nar/gks510
PMCID:
PMC3439903
AbstractArticlePDF–7.6M
4.
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
Peter J Mikulecky, Meenakshi K Kaw, Cristin C Brescia, Jennifer C Takach, Darren D Sledjeski, Andrew L Feig
Nat Struct Mol Biol. Author manuscript; available in PMC 2011 Apr 5.
Published in final edited form as: Nat Struct Mol Biol. 2004 Dec; 11(12): 1206–1214. Published online 2004 Nov 7. doi: 10.1038/nsmb858
PMCID:
PMC3071270
AbstractArticlePDF–842K
5.
Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding
Branislav Večerek, Mads Beich-Frandsen, Armin Resch, Udo Bläsi
Nucleic Acids Res. 2010 Mar; 38(4): 1284–1293. Published online 2009 Dec 6. doi: 10.1093/nar/gkp1125
PMCID:
PMC2831331
AbstractArticlePDF–664K
6.
The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
Toby J. Soper, Sarah A. Woodson
RNA. 2008 Sep; 14(9): 1907–1917. doi: 10.1261/rna.1110608
PMCID:
PMC2525945
AbstractArticlePDF–767K
7.
Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5′-leader
Armin Resch, Taras Afonyushkin, Tania B. Lombo, Kenneth J. McDowall, Udo Bläsi, Vladimir R. Kaberdin
RNA. 2008 Mar; 14(3): 454–459. doi: 10.1261/rna.603108
PMCID:
PMC2248258
AbstractArticlePDF–468K
8.
Quorum Sensing in Escherichia coli Is Signaled by AI-2/LsrR: Effects on Small RNA and Biofilm Architecture
Jun Li, Can Attila, Liang Wang, Thomas K. Wood, James J. Valdes, William E. Bentley
J Bacteriol. 2007 Aug; 189(16): 6011–6020. Published online 2007 Jun 8. doi: 10.1128/JB.00014-07
PMCID:
PMC1952038
AbstractArticlePDF–599K
9.
Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method
Kenjyo Miyauchi, Tomoya Ohara, Tsutomu Suzuki
Nucleic Acids Res. 2007 Feb; 35(4): e24. Published online 2007 Jan 23. doi: 10.1093/nar/gkl1129
PMCID:
PMC1851638
AbstractArticlePDF–4.9M
10.
Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA
Véronique Arluison, Sungchul Hohng, Rahul Roy, Olivier Pellegrini, Philippe Régnier, Taekjip Ha
Nucleic Acids Res. 2007 Feb; 35(3): 999–1006. Published online 2007 Jan 26. doi: 10.1093/nar/gkl1124
PMCID:
PMC1807976
AbstractArticlePDF–4.7M
11.
Translational control and target recognition by Escherichia coli small RNAs in vivo
Johannes H. Urban, Jörg Vogel
Nucleic Acids Res. 2007 Feb; 35(3): 1018–1037. Published online 2007 Jan 30. doi: 10.1093/nar/gkl1040
PMCID:
PMC1807950
AbstractArticlePDF–2.6M
12.
Limited Role for the DsrA and RprA Regulatory RNAs in rpoS Regulation in Salmonella enterica
Amy M. Jones, Adam Goodwill, Thomas Elliott
J Bacteriol. 2006 Jul; 188(14): 5077–5088. doi: 10.1128/JB.00206-06
PMCID:
PMC1539969
AbstractArticlePDF–665K
13.
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
CRISTIN C. BRESCIA, PETER J. MIKULECKY, ANDREW L. FEIG, DARREN D. SLEDJESKI
RNA. 2003 Jan; 9(1): 33–43. doi: 10.1261/rna.2570803
PMCID:
PMC1370368
AbstractArticlePDF–507K
14.
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs
ISABELLA MOLL, TARAS AFONYUSHKIN, ORESTA VYTVYTSKA, VLADIMIR R. KABERDIN, UDO BLÄSI
RNA. 2003 Nov; 9(11): 1308–1314. doi: 10.1261/rna.5850703
PMCID:
PMC1287052
AbstractArticlePDF–229K
15.
The Small Noncoding DsrA RNA Is an Acid Resistance Regulator in Escherichia coli
Richard A. Lease, Dorie Smith, Kathleen McDonough, Marlene Belfort
J Bacteriol. 2004 Sep; 186(18): 6179–6185. doi: 10.1128/JB.186.18.6179-6185.2004
PMCID:
PMC515158
AbstractArticlePDF–430K
16.
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli.
D D Sledjeski, A Gupta, S Gottesman
EMBO J. 1996 Aug 1; 15(15): 3993–4000.
PMCID:
PMC452119
SummaryPage BrowsePDF–1.5M
17.
Temperature Sensing by the dsrA Promoter
F. Repoila, S. Gottesman
J Bacteriol. 2003 Nov; 185(22): 6609–6614. doi: 10.1128/JB.185.22.6609-6614.2003
PMCID:
PMC262114
AbstractArticlePDF–377K
18.
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
Eric Massé, Freddy E. Escorcia, Susan Gottesman
Genes Dev. 2003 Oct 1; 17(19): 2374–2383. doi: 10.1101/gad.1127103
PMCID:
PMC218075
AbstractArticlePDF–331K
19.
Role of ppGpp in rpoS Stationary-Phase Regulation in Escherichia coli
Matthew Hirsch, Thomas Elliott
J Bacteriol. 2002 Sep; 184(18): 5077–5087. doi: 10.1128/JB.184.18.5077-5087.2002
PMCID:
PMC135317
AbstractArticlePDF–185K
20.
RecA-Independent Pathways of Lambdoid Prophage Induction in Escherichia coli
Dmitry V. Rozanov, Richard D’Ari, Sergey P. Sineoky
J Bacteriol. 1998 Dec; 180(23): 6306–6315. doi: 10.1128/jb.180.23.6306-6315.1998
PMCID:
PMC107717
AbstractArticlePDF–172K

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