PMC Links for GEO Profiles (Select 61902409) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 40142874.

A Second-generation Protein–Protein Interaction Network of Helicobacter pylori

Roman Häuser, Arnaud Ceol, Seesandra V. Rajagopala, Roberto Mosca, Gabriella Siszler, Nadja Wermke, Patricia Sikorski, Frank Schwarz, Matthias Schick, Stefan Wuchty, Patrick Aloy, Peter Uetz

Mol Cell Proteomics. 2014 May; 13(5): 1318–1329. Published online 2014 Mar 13. doi: 10.1074/mcp.O113.033571

PMCID:: PMC4014287

Abstract Article PDF–2.2M

Select item 37037895.

Vaginal Colonization by papG Allele II⁺ Escherichia coli Isolates from Pregnant and Nonpregnant Women as Predisposing Factor to Pyelonephritis

Sareaa Maseer Gatya Al-Mayahie

Infect Dis Obstet Gynecol. 2013; 2013: 860402. Published online 2013 Jun 19. doi: 10.1155/2013/860402

PMCID:: PMC3703789

Abstract Article PDF–495K

Select item 34904656.

Improved crystallization of Escherichia coli ATP synthase catalytic complex (F₁) by introducing a phosphomimetic mutation in subunit ∊

Ankoor Roy, Marcus L. Hutcheon, Thomas M. Duncan, Gino Cingolani

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1; 68(Pt 10): 1229–1233. Published online 2012 Sep 28. doi: 10.1107/S1744309112036718

PMCID:: PMC3490465

Abstract Article PDF–465K

Select item 31330227.

The Regulatory C-Terminal Domain of Subunit ε of F_oF₁ ATP Synthase Is Dispensable for Growth and Survival of Escherichia coli

Naohiro Taniguchi, Toshiharu Suzuki, Michael Berney, Masasuke Yoshida, Gregory M. Cook

J Bacteriol. 2011 Apr; 193(8): 2046–2052. doi: 10.1128/JB.01422-10

PMCID:: PMC3133022

Abstract Article PDF–382K

Select item 31091988.

Structure of the ATP synthase catalytic complex (F₁) from Escherichia coli in an auto-inhibited conformation

Gino Cingolani, Thomas M. Duncan

Nat Struct Mol Biol. Author manuscript; available in PMC 2011 Dec 1.

Published in final edited form as: Nat Struct Mol Biol. 2011 Jun; 18(6): 701–707. Published online 2011 May 22. doi: 10.1038/nsmb.2058

PMCID:: PMC3109198

Abstract Article PDF–2.7M

Select item 30895249.

Modulation of Nucleotide Specificity of Thermophilic F_oF₁-ATP Synthase by ϵ-Subunit

Toshiharu Suzuki, Chiaki Wakabayashi, Kazumi Tanaka, Boris A. Feniouk, Masasuke Yoshida

J Biol Chem. 2011 May 13; 286(19): 16807–16813. Published online 2011 Mar 23. doi: 10.1074/jbc.M110.209965

PMCID:: PMC3089524

Abstract Article PDF–1.3M

Select item 300993110.

Single Molecule Behavior of Inhibited and Active States of Escherichia coli ATP Synthase F₁ Rotation

Mizuki Sekiya, Hiroyuki Hosokawa, Mayumi Nakanishi-Matsui, Marwan K. Al-Shawi, Robert K. Nakamoto, Masamitsu Futai

J Biol Chem. 2010 Dec 31; 285(53): 42058–42067. Published online 2010 Oct 25. doi: 10.1074/jbc.M110.176701

PMCID:: PMC3009931

Abstract Article PDF–1.9M

Select item 271938611.

Mechanism of Inhibition by C-terminal α-Helices of the ϵ Subunit of Escherichia coli F_oF₁-ATP Synthase

Ryota Iino, Rie Hasegawa, Kazuhito V. Tabata, Hiroyuki Noji

J Biol Chem. 2009 Jun 26; 284(26): 17457–17464. Published online 2009 May 1. doi: 10.1074/jbc.M109.003798

PMCID:: PMC2719386

Abstract Article PDF–1.2M

Select item 258470012.

Domain compliance and elastic power transmission in rotary F_OF₁-ATPase

Hendrik Sielaff, Henning Rennekamp, André Wächter, Hao Xie, Florian Hilbers, Katrin Feldbauer, Stanley D. Dunn, Siegfried Engelbrecht, Wolfgang Junge

Proc Natl Acad Sci U S A. 2008 Nov 18; 105(46): 17760–17765. Published online 2008 Nov 10. doi: 10.1073/pnas.0807683105

PMCID:: PMC2584700

Abstract Article PDF–802K

Select item 191443813.

A Programmable Optical Angle Clamp for Rotary Molecular Motors

Teuta Pilizota, Thomas Bilyard, Fan Bai, Masamitsu Futai, Hiroyuki Hosokawa, Richard M. Berry

Biophys J. 2007 Jul 1; 93(1): 264–275. Published online 2007 Apr 13. doi: 10.1529/biophysj.106.091074

PMCID:: PMC1914438

Abstract Article PDF–737K

Select item 179730914.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 169820915.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla

J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06

PMCID:: PMC1698209

Abstract Article PDF–779K

Select item 168148116.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 153896517.

A functionally inactive, cold-stabilized form of the Escherichia coli F₁F_o ATP synthase

Mikhail A. Galkin, Robert R. Ishmukhametov, Steven B. Vik

Biochim Biophys Acta. Author manuscript; available in PMC 2007 Mar 1.

Published in final edited form as: Biochim Biophys Acta. 2006 Mar; 1757(3): 206–214. Published online 2006 Mar 20. doi: 10.1016/j.bbabio.2006.02.011

PMCID:: PMC1538965

Abstract Article PDF–701K

Select item 133438518.

TCDB: the Transporter Classification Database for membrane transport protein analyses and information

Milton H. Saier, Jr, Can V. Tran, Ravi D. Barabote

Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D181–D186. Published online 2005 Dec 28. doi: 10.1093/nar/gkj001

PMCID:: PMC1334385

Abstract Article PDF–550K

Select item 132520019.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405