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Items: 20

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 24419862.

Initiating translation with D-amino acids

Yuki Goto, Hiroshi Murakami, Hiroaki Suga

RNA. 2008 Jul; 14(7): 1390–1398. doi: 10.1261/rna.1020708

PMCID:: PMC2441986

Abstract Article PDF–662K

Select item 22921773.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 16814824.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 16814815.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 13252006.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 11710297.

Crystal structure of methionyl-tRNAfMet transformylase complexed with the initiator formyl-methionyl-tRNAfMet.

E Schmitt, M Panvert, S Blanquet, Y Mechulam

EMBO J. 1998 Dec 1; 17(23): 6819–6826. doi: 10.1093/emboj/17.23.6819

PMCID:: PMC1171029

Summary PDF–600K

Select item 11569668.

Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA

Natalia Ivanova, Michael Y. Pavlov, Elli Bouakaz, Måns Ehrenberg, Lovisa Holmberg Schiavone

Nucleic Acids Res. 2005; 33(11): 3529–3539. Published online 2005 Jun 21. doi: 10.1093/nar/gki666

PMCID:: PMC1156966

Abstract Article PDF–832K

Select item 4522079.

Structure of crystalline Escherichia coli methionyl-tRNA(f)Met formyltransferase: comparison with glycinamide ribonucleotide formyltransferase.

E Schmitt, S Blanquet, Y Mechulam

EMBO J. 1996 Sep 2; 15(17): 4749–4758.

PMCID:: PMC452207

Summary Page Browse PDF–2.5M

Select item 39489210.

Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation.

D Mazel, S Pochet, P Marlière

EMBO J. 1994 Feb 15; 13(4): 914–923. doi: 10.1002/j.1460-2075.1994.tb06335.x

PMCID:: PMC394892

Summary Page Browse PDF–2.0M

Select item 32003311.

Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?

D W Meek, R S Hayward

Nucleic Acids Res. 1984 Jul 25; 12(14): 5813–5821. doi: 10.1093/nar/12.14.5813

PMCID:: PMC320033

Summary Page Browse PDF–720K

Select item 20621212.

Disruption of the gene for Met-tRNA(fMet) formyltransferase severely impairs growth of Escherichia coli.

J M Guillon, Y Mechulam, J M Schmitter, S Blanquet, G Fayat

J Bacteriol. 1992 Jul; 174(13): 4294–4301. doi: 10.1128/jb.174.13.4294-4301.1992

PMCID:: PMC206212

Summary Page Browse PDF–1.6M

Select item 20508913.

Initiator transfer RNAs.

U L RajBhandary

J Bacteriol. 1994 Feb; 176(3): 547–552. doi: 10.1128/jb.176.3.547-552.1994

PMCID:: PMC205089

Summary Page Browse PDF–1.2M

Select item 20489214.

Importance of formylability and anticodon stem sequence to give a tRNA(Met) an initiator identity in Escherichia coli.

J M Guillon, Y Mechulam, S Blanquet, G Fayat

J Bacteriol. 1993 Jul; 175(14): 4507–4514. doi: 10.1128/jb.175.14.4507-4514.1993

PMCID:: PMC204892

Summary Page Browse PDF–1.5M

Select item 19301115.

The Escherichia coli fmt gene, encoding methionyl-tRNA(fMet) formyltransferase, escapes metabolic control.

T Meinnel, J M Guillon, Y Mechulam, S Blanquet

J Bacteriol. 1993 Feb; 175(4): 993–1000. doi: 10.1128/jb.175.4.993-1000.1993

PMCID:: PMC193011

Summary Page Browse PDF–1.4M

Select item 11706616.

Conformational change of Escherichia coli initiator methionyl-tRNA^fMet upon binding to methionyl-tRNA formyl transferase

Christine Mayer, Uttam L. RajBhandary

Nucleic Acids Res. 2002 Jul 1; 30(13): 2844–2850. doi: 10.1093/nar/gkf411

PMCID:: PMC117066

Abstract Article PDF–636K

Select item 5010617.

Striking effects of coupling mutations in the acceptor stem on recognition of tRNAs by Escherichia coli Met-tRNA synthetase and Met-tRNA transformylase.

C P Lee, M R Dyson, N Mandal, U Varshney, B Bahramian, U L RajBhandary

Proc Natl Acad Sci U S A. 1992 Oct 1; 89(19): 9262–9266. doi: 10.1073/pnas.89.19.9262

PMCID:: PMC50106

Summary Page Browse PDF–1.3M

Select item 4709318.

The discriminator base influences tRNA structure at the end of the acceptor stem and possibly its interaction with proteins.

C P Lee, N Mandal, M R Dyson, U L RajBhandary

Proc Natl Acad Sci U S A. 1993 Aug 1; 90(15): 7149–7152. doi: 10.1073/pnas.90.15.7149

PMCID:: PMC47093

Summary Page Browse PDF–1010K

Select item 2833919.

Suppressor mutations in Escherichia coli methionyl-tRNA formyltransferase: Role of a 16-amino acid insertion module in initiator tRNA recognition

Vaidyanathan Ramesh, Sadanand Gite, Yan Li, Uttam L. RajBhandary

Proc Natl Acad Sci U S A. 1997 Dec 9; 94(25): 13524–13529. doi: 10.1073/pnas.94.25.13524

PMCID:: PMC28339

Abstract Article PDF–232K

Select item 1531820.

Induced fit of a peptide loop of methionyl-tRNA formyltransferase triggered by the initiator tRNA substrate

Vaidyanathan Ramesh, Christine Mayer, Michael R. Dyson, Sadanand Gite, Uttam L. RajBhandary

Proc Natl Acad Sci U S A. 1999 Feb 2; 96(3): 875–880. doi: 10.1073/pnas.96.3.875

PMCID:: PMC15318

Abstract Article PDF–182K

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