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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 105517002.

Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability

Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai

Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108

PMCID:: PMC10551700

Abstract Article PDF–3.7M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85833005.

Distinct roles of nucleosome sliding and histone modifications in controlling the fidelity of transcription initiation

Huiming Zhang, Zhaolian Lu, Yu Zhan, Judith Rodriguez, Chen Lu, Yong Xue, Zhenguo Lin

RNA Biol. 2021; 18(11): 1642–1652. Published online 2021 Jan 28. doi: 10.1080/15476286.2020.1860389

PMCID:: PMC8583300

Abstract Article PDF–6.6M

Select item 83129416.

Pch2 orchestrates the meiotic recombination checkpoint from the cytoplasm

Esther Herruzo, Ana Lago-Maciel, Sara Baztán, Beatriz Santos, Jesús A. Carballo, Pedro A. San-Segundo

PLoS Genet. 2021 Jul; 17(7): e1009560. Published online 2021 Jul 14. doi: 10.1371/journal.pgen.1009560

PMCID:: PMC8312941

Abstract Article PDF–4.1M

Select item 82790047.

Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation

Marco Igor Valencia-Sánchez, Pablo De Ioannes, Miao Wang, David M. Truong, Rachel Lee, Jean-Paul Armache, Jef D. Boeke, Karim-Jean Armache

Science. Author manuscript; available in PMC 2021 Jul 14.

Published in final edited form as: Science. 2021 Jan 22; 371(6527): eabc6663. doi: 10.1126/science.abc6663

PMCID:: PMC8279004

Abstract Article PDF–1.7M

Select item 80273558.

Rad9, a 53BP1 Ortholog of Budding Yeast, Is Insensitive to Spo11-Induced Double-Strand Breaks During Meiosis

Takehiko Usui, Akira Shinohara

Front Cell Dev Biol. 2021; 9: 635383. Published online 2021 Mar 25. doi: 10.3389/fcell.2021.635383

PMCID:: PMC8027355

Abstract Article PDF–1.4M

Select item 79484209.

Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential

Ryan J. Separovich, Mandy W.M. Wong, Tyler R. Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins

J Biol Chem. 2021 Jan-Jun; 296: 100192. Published online 2020 Dec 20. doi: 10.1074/jbc.RA120.015995

PMCID:: PMC7948420

Abstract Article PDF–3.8M

Select item 739869610.

S-phase-independent silencing establishment in Saccharomyces cerevisiae

Davis Goodnight, Jasper Rine

eLife. 2020; 9: e58910. Published online 2020 Jul 20. doi: 10.7554/eLife.58910

PMCID:: PMC7398696

Abstract Article PDF–2.1M

Select item 700977811.

Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination

Marco Igor Valencia-Sánchez, Pablo De Ioannes, Miao Wang, Nikita Vasilyev, Ruoyu Chen, Evgeny Nudler, Jean-Paul Armache, Karim-Jean Armache

Mol Cell. Author manuscript; available in PMC 2020 Jun 6.

Published in final edited form as: Mol Cell. 2019 Jun 6; 74(5): 1010–1019.e6. Published online 2019 Apr 10. doi: 10.1016/j.molcel.2019.03.029

PMCID:: PMC7009778

Abstract Article PDF–2.3M

Select item 685852412.

Rpd3L and Hda1 histone deacetylases facilitate repair of broken forks by promoting sister chromatid cohesion

Pedro Ortega, Belén Gómez-González, Andrés Aguilera

Nat Commun. 2019; 10: 5178. Published online 2019 Nov 15. doi: 10.1038/s41467-019-13210-5

PMCID:: PMC6858524

Abstract Article PDF–2.1M

Select item 662722913.

Conserved crosstalk between histone deacetylation and H3K79 methylation generates DOT1L‐dose dependency in HDAC1‐deficient thymic lymphoma

Hanneke Vlaming, Chelsea M McLean, Tessy Korthout, Mir Farshid Alemdehy, Sjoerd Hendriks, Cesare Lancini, Sander Palit, Sjoerd Klarenbeek, Eliza Mari Kwesi‐Maliepaard, Thom M Molenaar, Liesbeth Hoekman, Thierry T Schmidlin, AF Maarten Altelaar, Tibor van Welsem, Jan‐Hermen Dannenberg, Heinz Jacobs, Fred van Leeuwen

EMBO J. 2019 Jul 15; 38(14): e101564. Published online 2019 Jun 17. doi: 10.15252/embj.2019101564

PMCID:: PMC6627229

Abstract Article PDF–1.2M

Select item 630495814.

Sae2 antagonizes Rad9 accumulation at DNA double-strand breaks to attenuate checkpoint signaling and facilitate end resection

Tai-Yuan Yu, Michael T. Kimble, Lorraine S. Symington

Proc Natl Acad Sci U S A. 2018 Dec 18; 115(51): E11961–E11969. Published online 2018 Dec 3. doi: 10.1073/pnas.1816539115

PMCID:: PMC6304958

Abstract Article PDF–1.5M

Select item 628075915.

Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions

Antoine Hocher, Myriam Ruault, Petra Kaferle, Marc Descrimes, Mickaël Garnier, Antonin Morillon, Angela Taddei

Genome Res. 2018 Dec; 28(12): 1867–1881. doi: 10.1101/gr.236554.118

PMCID:: PMC6280759

Abstract Article PDF–9.7M

Select item 626547116.

Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism

Tibor van Welsem, Tessy Korthout, Reggy Ekkebus, Dominique Morais, Thom M Molenaar, Kirsten van Harten, Deepani W Poramba-Liyanage, Su Ming Sun, Tineke L Lenstra, Rohith Srivas, Trey Ideker, Frank C P Holstege, Haico van Attikum, Farid El Oualid, Huib Ovaa, Iris J E Stulemeijer, Hanneke Vlaming, Fred van Leeuwen

Nucleic Acids Res. 2018 Nov 30; 46(21): 11251–11261. Published online 2018 Sep 8. doi: 10.1093/nar/gky801

PMCID:: PMC6265471

Abstract Article PDF–3.5M

Select item 624270517.

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery

Gonzalo Millan-Zambrano, Helena Santos-Rosa, Fabio Puddu, Samuel C. Robson, Stephen P. Jackson, Tony Kouzarides

Mol Cell. 2018 Nov 15; 72(4): 625–635.e4. doi: 10.1016/j.molcel.2018.09.023

PMCID:: PMC6242705

Abstract Article PDF–3.5M

Select item 621571318.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 613955319.

Set4 is a chromatin-associated protein, promotes survival during oxidative stress, and regulates stress response genes in yeast

Khoa Tran, Yogita Jethmalani, Deepika Jaiswal, Erin M. Green

J Biol Chem. 2018 Sep 14; 293(37): 14429–14443. Published online 2018 Aug 6. doi: 10.1074/jbc.RA118.003078

PMCID:: PMC6139553

Abstract Article PDF–2.2M

Select item 591969720.

An interplay between multiple sirtuins promotes completion of DNA replication in cells with short telomeres

Antoine Simoneau, Étienne Ricard, Hugo Wurtele

PLoS Genet. 2018 Apr; 14(4): e1007356. Published online 2018 Apr 16. doi: 10.1371/journal.pgen.1007356

PMCID:: PMC5919697

Abstract Article PDF–30M

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