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Items: 1 to 20 of 39

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Reciprocal hemizygosity analysis reveals that the Saccharomyces cerevisiae CGI121 gene affects lag time duration in synthetic grape must
Runze Li, Rebecca C Deed
G3 (Bethesda) 2021 Apr; 11(4): jkab061. Published online 2021 Mar 3. doi: 10.1093/g3journal/jkab061
PMCID:
PMC8759811
AbstractArticlePDF–648K
6.
Swc4 positively regulates telomere length independently of its roles in NuA4 and SWR1 complexes
Jia-Cheng Liu, Qian-Jin Li, Ming-Hong He, Can Hu, Pengfei Dai, Fei-Long Meng, Bo O Zhou, Jin-Qiu Zhou
Nucleic Acids Res. 2020 Dec 16; 48(22): 12792–12803. Published online 2020 Dec 3. doi: 10.1093/nar/gkaa1150
PMCID:
PMC7736797
AbstractArticlePDF–3.7M
7.
KEOPS complex promotes homologous recombination via DNA resection
Ming-Hong He, Jia-Cheng Liu, Yi-Si Lu, Zhi-Jing Wu, Ying-Ying Liu, Zhenfang Wu, Jing Peng, Jin-Qiu Zhou
Nucleic Acids Res. 2019 Jun 20; 47(11): 5684–5697. Published online 2019 Apr 2. doi: 10.1093/nar/gkz228
PMCID:
PMC6582355
AbstractArticlePDF–2.8M
8.
Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae
Nairita Maitra, Jayamani Anandhakumar, Heidi M. Blank, Craig D. Kaplan, Michael Polymenis
G3 (Bethesda) 2019 Jan; 9(1): 239–250. Published online 2018 Nov 21. doi: 10.1534/g3.118.200854
PMCID:
PMC6325893
AbstractArticlePDF–1.3M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
Transcriptome-wide analysis of roles for tRNA modifications in translational regulation
Hsin-Jung Chou, Elisa Donnard, H. Tobias Gustafsson, Manuel Garber, Oliver J. Rando
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 978–992.e4. Published online 2017 Nov 30. doi: 10.1016/j.molcel.2017.11.002
PMCID:
PMC5728682
AbstractArticlePDF–3.0M
11.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
12.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
13.
Proteomic analysis of the human KEOPS complex identifies C14ORF142 as a core subunit homologous to yeast Gon7
Leo C.K. Wan, Pierre Maisonneuve, Rachel K. Szilard, Jean-Philippe Lambert, Timothy F. Ng, Noah Manczyk, Hao Huang, Rob Laister, Amy A. Caudy, Anne-Claude Gingras, Daniel Durocher, Frank Sicheri
Nucleic Acids Res. 2017 Jan 25; 45(2): 805–817. Published online 2016 Nov 28. doi: 10.1093/nar/gkw1181
PMCID:
PMC5314774
AbstractArticlePDF–2.1M
14.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
15.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
16.
Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis
Leo C.K. Wan, Monica C. Pillon, Neroshan Thevakumaran, Yulong Sun, Avi Chakrabartty, Alba Guarné, Igor Kurinov, Daniel Durocher, Frank Sicheri
Nucleic Acids Res. 2016 Aug 19; 44(14): 6971–6980. Published online 2016 Jun 14. doi: 10.1093/nar/gkw542
PMCID:
PMC5001605
AbstractArticlePDF–3.5M
17.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
18.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
19.
Identification and Characterization of a Novel Family of Selective Antifungal Compounds (CANBEFs) That Interfere with Fungal Protein Synthesis
Gabriel Mircus, Nathaniel Albert, Dafna Ben-Yaakov, Dodo Chikvashvili, Yona Shadkchan, Dimitrios P. Kontoyiannis, Nir Osherov
Antimicrob Agents Chemother. 2015 Sep; 59(9): 5631–5640. Prepublished online 2015 Jul 6. Published online 2015 Aug 14. doi: 10.1128/AAC.00850-15
PMCID:
PMC4538511
AbstractArticlePDF–686K
20.
Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex
Wenhua Zhang, Bruno Collinet, Marc Graille, Marie-Claire Daugeron, Noureddine Lazar, Domenico Libri, Dominique Durand, Herman van Tilbeurgh
Nucleic Acids Res. 2015 Mar 31; 43(6): 3358–3372. Published online 2015 Mar 3. doi: 10.1093/nar/gkv155
PMCID:
PMC4381065
AbstractArticlePDF–5.3M

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