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Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 101876712.

Phosphorylation controls the oligomeric state of She2 and mRNA localization in yeast

Nastaran Farajzadeh, Karen Shahbabian, Yani Bouaziz, Emmanuelle Querido, Pascal Chartrand

RNA. 2023 Jun; 29(6): 745–755. doi: 10.1261/rna.079555.122

PMCID:: PMC10187671

Abstract Article PDF–6.8M

Select item 92860233.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 65049085.

Translation factor mRNA granules direct protein synthetic capacity to regions of polarized growth

Mariavittoria Pizzinga, Christian Bates, Jennifer Lui, Gabriella Forte, Fabián Morales-Polanco, Emma Linney, Barbora Knotkova, Beverley Wilson, Clara A. Solari, Luke E. Berchowitz, Paula Portela, Mark P. Ashe

J Cell Biol. 2019 May 6; 218(5): 1564–1581. Published online 2019 Mar 15. doi: 10.1083/jcb.201704019

PMCID:: PMC6504908

Abstract Article PDF–2.8M

Select item 64046016.

Genome-Wide Studies of Rho5-Interacting Proteins That Are Involved in Oxidant-Induced Cell Death in Budding Yeast

Komudi Singh, Mid Eum Lee, Maryam Entezari, Chan-Hun Jung, Yeonsoo Kim, Youngmin Park, Jack D. Fioretti, Won-Ki Huh, Hay-Oak Park, Pil Jung Kang

G3 (Bethesda) 2019 Mar; 9(3): 921–931. Published online 2019 Jan 22. doi: 10.1534/g3.118.200887

PMCID:: PMC6404601

Abstract Article PDF–1.9M

Select item 63471707.

Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation

Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch

PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180

PMCID:: PMC6347170

Abstract Article PDF–16M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56618859.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025410.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 495692111.

RNA asymmetric distribution and daughter/mother differentiation in yeast

Xavier Darzacq, Erin Powrie, Wei Gu, Robert H Singer, Daniel Zenklusen

Curr Opin Microbiol. Author manuscript; available in PMC 2016 Jul 22.

Published in final edited form as: Curr Opin Microbiol. 2003 Dec; 6(6): 614–620. doi: 10.1016/j.mib.2003.10.005

PMCID:: PMC4956921

Abstract Article PDF–706K

Select item 486983512.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Abstract Article PDF–2.7M

Select item 461603913.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 461583314.

A single molecule approach to mRNA transport by a class V myosin

Thomas E Sladewski, Kathleen M Trybus

RNA Biol. 2014 Aug; 11(8): 986–991. Published online 2014 Oct 31. doi: 10.4161/rna.29947

PMCID:: PMC4615833

Abstract Article PDF–563K

Select item 461564215.

ASH1 mRNP-core factors form stable complexes in absence of cargo RNA at physiological conditions

Franziska T Edelmann, Annika Niedner, Dierk Niessing

RNA Biol. 2015 Mar; 12(3): 233–237. Published online 2015 Mar 31. doi: 10.1080/15476286.2015.1017217

PMCID:: PMC4615642

Abstract Article PDF–293K

Select item 429164416.

Hooking She3p onto She2p for myosin-mediated cytoplasmic mRNA transport

Nimisha Singh, Günter Blobel, Hang Shi

Proc Natl Acad Sci U S A. 2015 Jan 6; 112(1): 142–147. Published online 2014 Dec 22. doi: 10.1073/pnas.1423194112

PMCID:: PMC4291644

Abstract Article PDF–1.3M

Select item 423246217.

Electrophilic activity-based RNA probes reveal a self-alkylating RNA for RNA labeling

Richard I. McDonald, John P. Guilinger, Shankar Mukherji, Edward A. Curtis, Won I. Lee, David R. Liu

Nat Chem Biol. Author manuscript; available in PMC 2015 Jun 1.

Published in final edited form as: Nat Chem Biol. 2014 Dec; 10(12): 1049–1054. Published online 2014 Oct 12. doi: 10.1038/nchembio.1655

PMCID:: PMC4232462

Abstract Article PDF–1.3M

Select item 411779718.

Co-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization

Karen Shahbabian, Célia Jeronimo, Amélie Forget, François Robert, Pascal Chartrand

Nucleic Acids Res. 2014 Sep 1; 42(13): 8692–8704. Published online 2014 Jul 9. doi: 10.1093/nar/gku597

PMCID:: PMC4117797

Abstract Article PDF–3.9M

Select item 405342419.

Unidirectional P-Body Transport during the Yeast Cell Cycle

Cecilia Garmendia-Torres, Alexander Skupin, Sean A. Michael, Pekka Ruusuvuori, Nathan J. Kuwada, Didier Falconnet, Gregory A. Cary, Carl Hansen, Paul A. Wiggins, Aimée M. Dudley

PLoS One. 2014; 9(6): e99428. Published online 2014 Jun 11. doi: 10.1371/journal.pone.0099428

PMCID:: PMC4053424

Abstract Article PDF–2.5M

Select item 397333320.

Scp160p is required for translational efficiency of codon-optimized mRNAs in yeast

Wolf D. Hirschmann, Heidrun Westendorf, Andreas Mayer, Gina Cannarozzi, Patrick Cramer, Ralf-Peter Jansen

Nucleic Acids Res. 2014 Apr; 42(6): 4043–4055. Published online 2014 Jan 20. doi: 10.1093/nar/gkt1392

PMCID:: PMC3973333

Abstract Article PDF–2.1M

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