PMC Links for GEO Profiles (Select 6301165) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 72794964.

Yeast Mitochondrial Translation Initiation Factor 3 Interacts with Pet111p to Promote COX2 mRNA Translation

Ivan Chicherin, Sergey Levitskii, Maria V. Baleva, Igor A. Krasheninnikov, Maxim V. Patrushev, Piotr Kamenski

Int J Mol Sci. 2020 May; 21(10): 3414. Published online 2020 May 12. doi: 10.3390/ijms21103414

PMCID:: PMC7279496

Abstract Article PDF–2.1M

Select item 66782815.

S. cerevisiae Strain Lacking Mitochondrial IF3 Shows Increased Levels of Tma19p during Adaptation to Respiratory Growth

Sergey Levitskii, Maria V. Baleva, Ivan Chicherin, Igor A. Krasheninnikov, Piotr Kamenski

Cells. 2019 Jul; 8(7): 645. Published online 2019 Jun 26. doi: 10.3390/cells8070645

PMCID:: PMC6678281

Abstract Article PDF–1.5M

Select item 63215466.

Biological and Evolutionary Significance of Terminal Extensions of Mitochondrial Translation Initiation Factor 3

Ksenia Derbikova, Anton Kuzmenko, Sergey Levitskii, Maria Klimontova, Ivan Chicherin, Maria V. Baleva, Igor A. Krasheninnikov, Piotr Kamenski

Int J Mol Sci. 2018 Dec; 19(12): 3861. Published online 2018 Dec 4. doi: 10.3390/ijms19123861

PMCID:: PMC6321546

Abstract Article PDF–1.3M

Select item 61471657.

60S dynamic state of bacterial ribosome is fixed by yeast mitochondrial initiation factor 3

Sergey Levitskii, Ksenia Derbikova, Maria V. Baleva, Anton Kuzmenko, Andrey V. Golovin, Ivan Chicherin, Igor A. Krasheninnikov, Piotr Kamenski

PeerJ. 2018; 6: e5620. Published online 2018 Sep 17. doi: 10.7717/peerj.5620

PMCID:: PMC6147165

Abstract Article PDF–6.5M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 57383579.

Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly

Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt

Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4

PMCID:: PMC5738357

Abstract Article PDF–3.1M

Select item 566597710.

INA complex liaises the F₁F_o-ATP synthase membrane motor modules

Nataliia Naumenko, Marcel Morgenstern, Robert Rucktäschel, Bettina Warscheid, Peter Rehling

Nat Commun. 2017; 8: 1237. Published online 2017 Nov 1. doi: 10.1038/s41467-017-01437-z

PMCID:: PMC5665977

Abstract Article PDF–1.9M

Select item 566188511.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 564803212.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 506361213.

Proteomic profiling of the mitochondrial ribosome identifies Atp25 as a composite mitochondrial precursor protein

Michael W. Woellhaf, Frederik Sommer, Michael Schroda, Johannes M. Herrmann

Mol Biol Cell. 2016 Oct 15; 27(20): 3031–3039. doi: 10.1091/mbc.E16-07-0513

PMCID:: PMC5063612

Abstract Article PDF–4.5M

Select item 493733914.

Ribosome recycling defects modify the balance between the synthesis and assembly of specific subunits of the oxidative phosphorylation complexes in yeast mitochondria

Jelena Ostojić, Cristina Panozzo, Alexa Bourand-Plantefol, Christopher J. Herbert, Geneviève Dujardin, Nathalie Bonnefoy

Nucleic Acids Res. 2016 Jul 8; 44(12): 5785–5797. Published online 2016 Jun 1. doi: 10.1093/nar/gkw490

PMCID:: PMC4937339

Abstract Article PDF–5.6M

Select item 470795215.

Protein-RNA networks revealed through covalent RNA marks

Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens

Nat Methods. Author manuscript; available in PMC 2016 May 18.

Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651

PMCID:: PMC4707952

Abstract Article PDF–856K

Select item 470301216.

Target selection by natural and redesigned PUF proteins

Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112

PMCID:: PMC4703012

Abstract Article PDF–1.3M

Select item 470052917.

Aim-less translation: loss of Saccharomyces cerevisiae mitochondrial translation initiation factor mIF3/Aim23 leads to unbalanced protein synthesis

Anton Kuzmenko, Ksenia Derbikova, Roger Salvatori, Stoyan Tankov, Gemma C. Atkinson, Tanel Tenson, Martin Ott, Piotr Kamenski, Vasili Hauryliuk

Sci Rep. 2016; 6: 18749. Published online 2016 Jan 5. doi: 10.1038/srep18749

PMCID:: PMC4700529

Abstract Article PDF–1.4M

Select item 461603918.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 441686419.

Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes

Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker

J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017

PMCID:: PMC4416864

Abstract Article PDF–3.4M

Select item 397865320.

Mitochondrial translation initiation machinery: Conservation and diversification

Anton Kuzmenko, Gemma C. Atkinson, Sergey Levitskii, Nikolay Zenkin, Tanel Tenson, Vasili Hauryliuk, Piotr Kamenski

Biochimie. 2014 May; 100(100): 132–140. doi: 10.1016/j.biochi.2013.07.024

PMCID:: PMC3978653

Abstract Article

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