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Items: 1 to 20 of 26

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
A High-Copy Suppressor Screen Reveals a Broad Role of Prefoldin-like Bud27 in the TOR Signaling Pathway in Saccharomyces cerevisiae
Francisco Gutiérrez-Santiago, María Cintas-Galán, Manuel Martín-Expósito, Maria del Carmen Mota-Trujillo, Cristina Cobo-Huesa, Jorge Perez-Fernandez, Francisco Navarro Gómez
Genes (Basel) 2022 May; 13(5): 748. Published online 2022 Apr 24. doi: 10.3390/genes13050748
PMCID:
PMC9141189
AbstractArticlePDF–1.3M
3.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
4.
Vac8 determines phagophore assembly site vacuolar localization during nitrogen starvation-induced autophagy
Damian Gatica, Xin Wen, Heesun Cheong, Daniel J. Klionsky
Autophagy. 2021; 17(7): 1636–1648. Published online 2020 Jun 17. doi: 10.1080/15548627.2020.1776474
PMCID:
PMC8354615
AbstractArticlePDF–7.4M
5.
Pex3 confines pexophagy receptor activity of Atg36 to peroxisomes by regulating Hrr25-mediated phosphorylation and proteasomal degradation
Sota Meguro, Xizhen Zhuang, Hiromi Kirisako, Hitoshi Nakatogawa
J Biol Chem. 2020 Nov 27; 295(48): 16292–16298. Published online 2020 Sep 21. doi: 10.1074/jbc.RA120.013565
PMCID:
PMC7705307
AbstractArticlePDF–1.4M
6.
Production of the Fragrance Geraniol in Peroxisomes of a Product-Tolerant Baker’s Yeast
Jennifer Gerke, Holm Frauendorf, Dominik Schneider, Maxim Wintergoller, Thomas Hofmeister, Anja Poehlein, Ziga Zebec, Eriko Takano, Nigel S. Scrutton, Gerhard H. Braus
Front Bioeng Biotechnol. 2020; 8: 582052. Published online 2020 Sep 23. doi: 10.3389/fbioe.2020.582052
PMCID:
PMC7546902
AbstractArticlePDF–9.7M
7.
A synthetic biosensor to detect peroxisomal acetyl-CoA concentration for compartmentalized metabolic engineering
Herbert M. Huttanus, Ryan S. Senger
PeerJ. 2020; 8: e9805. Published online 2020 Sep 8. doi: 10.7717/peerj.9805
PMCID:
PMC7485502
AbstractArticlePDF–405K
8.
DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae
Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue
Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622
PMCID:
PMC7138222
AbstractArticlePDF–8.0M
9.
The Peroxisomal PTS1-Import Defect of PEX1- Deficient Cells Is Independent of Pexophagy in Saccharomyces cerevisiae
Thomas Mastalski, Rebecca Brinkmeier, Harald W. Platta
Int J Mol Sci. 2020 Feb; 21(3): 867. Published online 2020 Jan 29. doi: 10.3390/ijms21030867
PMCID:
PMC7037794
AbstractArticlePDF–887K
10.
ER-mitochondria contacts are required for pexophagy in Saccharomyces cerevisiae
Xu Liu, Xin Wen, Daniel J. Klionsky
Contact (Thousand Oaks) Author manuscript; available in PMC 2019 Mar 9.
Published in final edited form as: Contact (Thousand Oaks). 2018 Jan-Dec; 2: 10.1177/2515256418821584. Published online 2019 Jan 8. doi: 10.1177/2515256418821584
PMCID:
PMC6408953
AbstractArticlePDF–829K
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
13.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
14.
The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
PMCID:
PMC5484544
AbstractArticlePDF–14M
15.
Deficiency of the exportomer components Pex1, Pex6, and Pex15 causes enhanced pexophagy in Saccharomyces cerevisiae
James M Nuttall, Alison M Motley, Ewald H Hettema
Autophagy. 2014 May; 10(5): 835–845. Published online 2014 Mar 18. doi: 10.4161/auto.28259
PMCID:
PMC5119063
AbstractArticlePDF–2.1M
16.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
17.
Mechanism of liponecrosis, a distinct mode of programmed cell death
Vincent R Richard, Adam Beach, Amanda Piano, Anna Leonov, Rachel Feldman, Michelle T Burstein, Pavlo Kyryakov, Alejandra Gomez-Perez, Anthony Arlia-Ciommo, Stefanie Baptista, Cory Campbell, Daniel Goncharov, Sonia Pannu, Dimitri Patrinos, Behnaz Sadri, Veronika Svistkova, Andrew Victor, Vladimir I Titorenko
Cell Cycle. 2014 Dec 1; 13(23): 3707–3726. Published online 2014 Oct 29. doi: 10.4161/15384101.2014.965003
PMCID:
PMC4613542
AbstractArticlePDF–1.5M
18.
Hrr25 triggers selective autophagy–related pathways by phosphorylating receptor proteins
Chikara Tanaka, Li-Jing Tan, Keisuke Mochida, Hiromi Kirisako, Michiko Koizumi, Eri Asai, Machiko Sakoh-Nakatogawa, Yoshinori Ohsumi, Hitoshi Nakatogawa
J Cell Biol. 2014 Oct 13; 207(1): 91–105. doi: 10.1083/jcb.201402128
PMCID:
PMC4195827
AbstractArticlePDF–3.5M
19.
The progression of peroxisomal degradation through autophagy requires peroxisomal division
Kai Mao, Xu Liu, Yuchen Feng, Daniel J Klionsky
Autophagy. 2014 Apr 1; 10(4): 652–661. Published online 2014 Jan 21. doi: 10.4161/auto.27852
PMCID:
PMC4091152
AbstractArticlePDF–3.5M
20.
Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation
Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez
PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086
PMCID:
PMC3764036
AbstractArticlePDF–496K

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