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Items: 1 to 20 of 86

1.
Ykt6 functionally overlaps with vacuolar and exocytic R-SNAREs in the yeast Saccharomyces cerevisiae
Hayate Watanabe, Shingo Urano, Nozomi Kikuchi, Yurika Kubo, Ayumi Kikuchi, Katsuya Gomi, Takahiro Shintani
J Biol Chem. 2024 May; 300(5): 107274. Published online 2024 Apr 6. doi: 10.1016/j.jbc.2024.107274
PMCID:
PMC11091695
AbstractArticlePDF–2.1M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
The SNARE-associated protein Sft2 functions in Imh1-mediated SNARE recycling transport upon ER stress
Chun-Chi Lai, Wan-Yun Chiu, Yan-Ting Chen, Chia-Lu Wu, Fang-Jen S. Lee
Mol Biol Cell. 2023 Oct 1; 34(11): ar112. Published online 2023 Sep 21. doi: 10.1091/mbc.E23-01-0019
PMCID:
PMC10559307
AbstractArticlePDF–9.6M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
The yeast 2-micron plasmid Rep2 protein has Rep1-independent partitioning function
Anastasiia Mereshchuk, Peter S Johnstone, Joyce S K Chew, Melanie J Dobson
Nucleic Acids Res. 2022 Oct 14; 50(18): 10571–10585. Published online 2022 Sep 26. doi: 10.1093/nar/gkac810
PMCID:
PMC9561267
AbstractArticlePDF–604K
6.
Recycling of cell surface membrane proteins from yeast endosomes is regulated by ubiquitinated Ist1
Kamilla M.E. Laidlaw, Grant Calder, Chris MacDonald
J Cell Biol. 2022 Nov 7; 221(11): e202109137. Published online 2022 Sep 20. doi: 10.1083/jcb.202109137
PMCID:
PMC9491851
AbstractArticlePDF–8.0M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
9.
ORP/Osh mediate cross-talk between ER-plasma membrane contact site components and plasma membrane SNAREs
Marion Weber-Boyvat, Thorsten Trimbuch, Saundarya Shah, Jussi Jäntti, Vesa M. Olkkonen, Christian Rosenmund
Cell Mol Life Sci. 2021 Feb; 78(4): 1689–1708. Published online 2020 Jul 30. doi: 10.1007/s00018-020-03604-w
PMCID:
PMC7904734
AbstractArticlePDF–3.9M
10.
Yeast synaptobrevin, Snc1, engages distinct routes of postendocytic recycling mediated by a sorting nexin, Rcy1-COPI, and retromer
Jordan T. Best, Peng Xu, Jack G. McGuire, Shannon N. Leahy, Todd R. Graham
Mol Biol Cell. 2020 Apr 15; 31(9): 944–962. doi: 10.1091/mbc.E19-05-0290
PMCID:
PMC7185969
AbstractArticlePDF–4.0M
11.
Retrograde trafficking and quality control of yeast synaptobrevin, Snc1, are conferred by its transmembrane domain
Mengxiao Ma, Christopher G. Burd
Mol Biol Cell. 2019 Jul 1; 30(14): 1729–1742. doi: 10.1091/mbc.E19-02-0117
PMCID:
PMC6727757
AbstractArticlePDF–2.4M
12.
A Flow Cytometry-Based Phenotypic Screen To Identify Novel Endocytic Factors in Saccharomyces cerevisiae
Kristie Wrasman, Salvatore L. Alioto, Yorke Zhang, Kyle Hoban, Marjon Khairy, Bruce L. Goode, Beverly Wendland
G3 (Bethesda) 2018 May; 8(5): 1497–1512. Published online 2018 Mar 14. doi: 10.1534/g3.118.200102
PMCID:
PMC5940143
AbstractArticlePDF–2.3M
13.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
14.
COPI mediates recycling of an exocytic SNARE by recognition of a ubiquitin sorting signal
Peng Xu, Hannah M Hankins, Chris MacDonald, Samuel J Erlinger, Meredith N Frazier, Nicholas S Diab, Robert C Piper, Lauren P Jackson, Jason A MacGurn, Todd R Graham
eLife. 2017; 6: e28342. Published online 2017 Oct 23. doi: 10.7554/eLife.28342
PMCID:
PMC5663479
AbstractArticlePDF–4.2M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
Rewiring a Rab regulatory network reveals a possible inhibitory role for the vesicle tether, Uso1
Hua Yuan, Saralin Davis, Susan Ferro-Novick, Peter Novick
Proc Natl Acad Sci U S A. 2017 Oct 10; 114(41): E8637–E8645. Published online 2017 Sep 25. doi: 10.1073/pnas.1708394114
PMCID:
PMC5642711
AbstractArticlePDF–1.6M
17.
Genetic dissection of early endosomal recycling highlights a TORC1-independent role for Rag GTPases
Chris MacDonald, Robert C. Piper
J Cell Biol. 2017 Oct 2; 216(10): 3275–3290. doi: 10.1083/jcb.201702177
PMCID:
PMC5626546
AbstractArticlePDF–2.7M
18.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
19.
Syp1 regulates the clathrin-mediated and clathrin-independent endocytosis of multiple cargo proteins through a novel sorting motif
Amanda Reider Apel, Kyle Hoban, Silvia Chuartzman, Raffi Tonikian, Sachdev Sidhu, Maya Schuldiner, Beverly Wendland, Derek Prosser
Mol Biol Cell. 2017 Sep 1; 28(18): 2434–2448. doi: 10.1091/mbc.E15-10-0731
PMCID:
PMC5576906
AbstractArticlePDF–1.9M
20.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M

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