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Items: 1 to 20 of 54

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
PMCID:
PMC10551700
AbstractArticlePDF–3.7M
4.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
5.
Adaptation to high rates of chromosomal instability and aneuploidy through multiple pathways in budding yeast
Matthew N Clarke, Theodor Marsoner, Manuel Alonso Y Adell, Madhwesh C Ravichandran, Christopher S Campbell
EMBO J. 2023 Apr; 42(8): e111500. Published online 2022 Dec 19. doi: 10.15252/embj.2022111500
PMCID:
PMC10106982
AbstractArticlePDF–1.2M
6.
Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes
Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees
Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092
PMCID:
PMC9339293
AbstractArticlePDF–7.9M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation
Axel F Brilot, Andrew S Lyon, Alex Zelter, Shruthi Viswanath, Alison Maxwell, Michael J MacCoss, Eric G Muller, Andrej Sali, Trisha N Davis, David A Agard
eLife. 2021; 10: e65168. Published online 2021 May 5. doi: 10.7554/eLife.65168
PMCID:
PMC8099430
AbstractArticlePDF–11M
9.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
10.
AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering
Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann
EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117
PMCID:
PMC7560216
AbstractArticlePDF–3.6M
11.
Orderly assembly underpinning built-in asymmetry in the yeast centrosome duplication cycle requires cyclin-dependent kinase
Marco Geymonat, Qiuran Peng, Zhiang Guo, Zulin Yu, Jay R Unruh, Sue L Jaspersen, Marisa Segal
eLife. 2020; 9: e59222. Published online 2020 Aug 27. doi: 10.7554/eLife.59222
PMCID:
PMC7470843
AbstractArticlePDF–7.1M
12.
Novel phosphorylation states of the yeast spindle pole body
Kimberly K. Fong, Alex Zelter, Beth Graczyk, Jill M. Hoyt, Michael Riffle, Richard Johnson, Michael J. MacCoss, Trisha N. Davis
Biol Open. 2018 Oct 15; 7(10): bio033647. Published online 2018 Jun 14. doi: 10.1242/bio.033647
PMCID:
PMC6215409
AbstractArticlePDF–1.1M
13.
The microtubule polymerase Stu2 promotes oligomerization of the γ-TuSC for cytoplasmic microtubule nucleation
Judith Gunzelmann, Diana Rüthnick, Tien-chen Lin, Wanlu Zhang, Annett Neuner, Ursula Jäkle, Elmar Schiebel
eLife. 2018; 7: e39932. Published online 2018 Sep 17. doi: 10.7554/eLife.39932
PMCID:
PMC6158006
AbstractArticlePDF–4.0M
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
Def1 interacts with TFIIH and modulates RNA polymerase II transcription
Nivedita Damodaren, Trevor Van Eeuwen, Joanna Zamel, Enrique Lin-Shiao, Nir Kalisman, Kenji Murakami
Proc Natl Acad Sci U S A. 2017 Dec 12; 114(50): 13230–13235. Published online 2017 Nov 27. doi: 10.1073/pnas.1707955114
PMCID:
PMC5740667
AbstractArticlePDF–1.2M
16.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
17.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
18.
Higher-order oligomerization of Spc110p drives γ-tubulin ring complex assembly
Andrew S. Lyon, Geneviève Morin, Michelle Moritz, King Clyde B. Yabut, Tamira Vojnar, Alex Zelter, Eric Muller, Trisha N. Davis, David A. Agard
Mol Biol Cell. 2016 Jul 15; 27(14): 2245–2258. doi: 10.1091/mbc.E16-02-0072
PMCID:
PMC4945142
AbstractArticlePDF–3.9M
19.
Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure
Charles H Greenberg, Justin Kollman, Alex Zelter, Richard Johnson, Michael J. MacCoss, Trisha N. Davis, David A. Agard, Andrej Sali
J Struct Biol. Author manuscript; available in PMC 2017 Jun 1.
Published in final edited form as: J Struct Biol. 2016 Jun; 194(3): 303–310. Published online 2016 Mar 8. doi: 10.1016/j.jsb.2016.03.006
PMCID:
PMC4866596
AbstractArticlePDF–774K
20.
Interaction of CK1δ with γTuSC ensures proper microtubule assembly and spindle positioning
Yutian Peng, Michelle Moritz, Xuemei Han, Thomas H. Giddings, Andrew Lyon, Justin Kollman, Mark Winey, John Yates, III, David A. Agard, David G. Drubin, Georjana Barnes
Mol Biol Cell. 2015 Jul 1; 26(13): 2505–2518. doi: 10.1091/mbc.E14-12-1627
PMCID:
PMC4571304
AbstractArticlePDF–1.3M

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