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Items: 1 to 20 of 136

1.
Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast
Johanna Kociemba, Andreas Christ Sølvsten Jørgensen, Nika Tadić, Anthony Harris, Theodora Sideri, Wei Yee Chan, Fairouz Ibrahim, Elçin Ünal, Mark Skehel, Vahid Shahrezaei, Orlando Argüello-Miranda, Folkert Jacobus van Werven
EMBO J. 2024 Aug; 43(15): 3256–3286. Published online 2024 Jun 17. doi: 10.1038/s44318-024-00149-7
PMCID:
PMC11294583
AbstractArticlePDF–5.1M
2.
Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH
Kathiresan Selvam, Jun Xu, Hannah E. Wilson, Juntaek Oh, Qingrong Li, Dong Wang, John J. Wyrick
Nat Commun. 2024; 15: 6223. Published online 2024 Jul 23. doi: 10.1038/s41467-024-50539-y
PMCID:
PMC11266705
AbstractArticlePDF–2.5M
3.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
4.
Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking
Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan
J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047
PMCID:
PMC10798858
AbstractArticlePDF–6.4M
5.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
6.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
7.
Rpb7 represses transcription-coupled nucleotide excision repair
Wenzhi Gong, Shisheng Li
J Biol Chem. 2023 Aug; 299(8): 104969. Published online 2023 Jun 27. doi: 10.1016/j.jbc.2023.104969
PMCID:
PMC10382679
AbstractArticlePDF–5.3M
8.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
9.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
10.
FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner
Célia Jeronimo, Andrew Angel, Vu Q. Nguyen, Jee Min Kim, Christian Poitras, Elie Lambert, Pierre Collin, Jane Mellor, Carl Wu, François Robert
Mol Cell. Author manuscript; available in PMC 2022 Sep 2.
Published in final edited form as: Mol Cell. 2021 Sep 2; 81(17): 3542–3559.e11. Published online 2021 Aug 10. doi: 10.1016/j.molcel.2021.07.010
PMCID:
PMC9149603
AbstractArticlePDF–3.0M
11.
SPT5 stabilization of promoter-proximal RNA polymerase II
Yuki Aoi, Yoh-hei Takahashi, Avani P. Shah, Marta Iwanaszko, Emily J. Rendleman, Nabiha H. Khan, Byoung-Kyu Cho, Young Ah Goo, Sheetal Ganesan, Neil L. Kelleher, Ali Shilatifard
Mol Cell. Author manuscript; available in PMC 2022 Nov 4.
Published in final edited form as: Mol Cell. 2021 Nov 4; 81(21): 4413–4424.e5. Published online 2021 Sep 3. doi: 10.1016/j.molcel.2021.08.006
PMCID:
PMC8687145
AbstractArticlePDF–1.6M
12.
Elongating RNA polymerase II and RNA:DNA hybrids hinder fork progression and gene expression at sites of head-on replication-transcription collisions
Luca Zardoni, Eleonora Nardini, Alessandra Brambati, Chiara Lucca, Ramveer Choudhary, Federica Loperfido, Simone Sabbioneda, Giordano Liberi
Nucleic Acids Res. 2021 Dec 16; 49(22): 12769–12784. Published online 2021 Dec 8. doi: 10.1093/nar/gkab1146
PMCID:
PMC8682787
AbstractArticlePDF–8.6M
13.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
14.
Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier
Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor
Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755
PMCID:
PMC8492961
AbstractArticle
15.
Opposite roles of transcription elongation factors Spt4/5 and Elf1 in RNA polymerase II transcription through B-form versus non-B DNA structures
Jun Xu, Jenny Chong, Dong Wang
Nucleic Acids Res. 2021 May 21; 49(9): 4944–4953. Published online 2021 Apr 20. doi: 10.1093/nar/gkab240
PMCID:
PMC8136819
AbstractArticlePDF–2.4M
16.
Structural basis of nucleosome transcription mediated by Chd1 and FACT
Lucas Farnung, Moritz Ochmann, Maik Engeholm, Patrick Cramer
Nat Struct Mol Biol. 2021; 28(4): 382–387. Published online 2021 Apr 12. doi: 10.1038/s41594-021-00578-6
PMCID:
PMC8046669
AbstractArticlePDF–7.5M
17.
Spt4 Promotes Pol I Processivity and Transcription Elongation
Abigail K. Huffines, Yvonne J. K. Edwards, David A. Schneider
Genes (Basel) 2021 Mar; 12(3): 413. Published online 2021 Mar 12. doi: 10.3390/genes12030413
PMCID:
PMC8000598
AbstractArticlePDF–1.1M
18.
Differential scaling of gene expression with cell size may explain size control in budding yeast
Yuping Chen, Gang Zhao, Jakub Zahumensky, Sangeet Honey, Bruce Futcher
Mol Cell. Author manuscript; available in PMC 2021 Apr 16.
Published in final edited form as: Mol Cell. 2020 Apr 16; 78(2): 359–370.e6. Published online 2020 Apr 3. doi: 10.1016/j.molcel.2020.03.012
PMCID:
PMC7963363
AbstractArticlePDF–2.3M
19.
Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces
Nitika Badjatia, Matthew J. Rossi, Alain R. Bataille, Chitvan Mittal, William K.M. Lai, B. Franklin Pugh
Cell Rep. Author manuscript; available in PMC 2021 Feb 12.
Published in final edited form as: Cell Rep. 2021 Jan 19; 34(3): 108640. doi: 10.1016/j.celrep.2020.108640
PMCID:
PMC7879390
AbstractArticlePDF–2.5M
20.
Dynamics of RNA polymerase II and elongation factor Spt4/5 recruitment during activator-dependent transcription
Grace A. Rosen, Inwha Baek, Larry J. Friedman, Yoo Jin Joo, Stephen Buratowski, Jeff Gelles
Proc Natl Acad Sci U S A. 2020 Dec 22; 117(51): 32348–32357. Published online 2020 Dec 8. doi: 10.1073/pnas.2011224117
PMCID:
PMC7768755
AbstractArticlePDF–1.3M

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