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Items: 1 to 20 of 44

1.
The cdk-activating kinase (CAK): from yeast to mammals
P. Kaldis
Cell Mol Life Sci. 1999 Feb; 55(2): 284–296. Published online 2014 Jan 30. doi: 10.1007/s000180050290
PMCID:
PMC11146862
AbstractArticlePDF–271K
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
The telomeric Cdc13–Stn1–Ten1 complex regulates RNA polymerase II transcription
Olga Calvo, Nathalie Grandin, Antonio Jordán-Pla, Esperanza Miñambres, Noelia González-Polo, José E Pérez-Ortín, Michel Charbonneau
Nucleic Acids Res. 2019 Jul 9; 47(12): 6250–6268. Published online 2019 Apr 22. doi: 10.1093/nar/gkz279
PMCID:
PMC6614848
AbstractArticlePDF–4.5M
4.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
5.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
6.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
7.
Ssp2 Binding Activates the Smk1 Mitogen-Activated Protein Kinase
Chong Wai Tio, Gregory Omerza, Timothy Phillips, Hua Jane Lou, Benjamin E. Turk, Edward Winter
Mol Cell Biol. 2017 May 15; 37(10): e00607-16. Prepublished online 2017 Feb 21. Published online 2017 May 2. doi: 10.1128/MCB.00607-16
PMCID:
PMC5477552
AbstractArticlePDF–1.9M
8.
Identifying pathogenicity of human variants via paralog-based yeast complementation
Fan Yang, Song Sun, Guihong Tan, Michael Costanzo, David E. Hill, Marc Vidal, Brenda J. Andrews, Charles Boone, Frederick P. Roth
PLoS Genet. 2017 May; 13(5): e1006779. Published online 2017 May 25. doi: 10.1371/journal.pgen.1006779
PMCID:
PMC5466341
AbstractArticlePDF–8.8M
9.
Autophosphorylation of the Smk1 MAPK is spatially and temporally regulated by Ssp2 during meiotic development in yeast
Chong Wai Tio, Gregory Omerza, Sham Sunder, Edward Winter
Mol Biol Cell. 2015 Oct 1; 26(19): 3546–3555. doi: 10.1091/mbc.E15-05-0322
PMCID:
PMC4591697
AbstractArticlePDF–3.0M
10.
A phosphorylation-independent role for the yeast cyclin-dependent kinase activating kinase Cak1
Su-Hwa Kim, Keerthi Gadiparthi, Stephen J. Kron, Ana A. Kitazono
Gene. Author manuscript; available in PMC 2015 Sep 8.
Published in final edited form as: Gene. 2009 Nov 15; 447(2): 97–105. Published online 2009 Jul 30. doi: 10.1016/j.gene.2009.07.016
PMCID:
PMC4562314
AbstractArticlePDF–662K
11.
Fission Yeast Cdk7 Controls Gene Expression through both Its CAK and C-Terminal Domain Kinase Activities
Maxime Devos, Elise Mommaerts, Valerie Migeot, Harm van Bakel, Damien Hermand
Mol Cell Biol. 2015 May; 35(9): 1480–1490. Prepublished online 2015 Feb 17. Published online 2015 Apr 6. doi: 10.1128/MCB.00024-15
PMCID:
PMC4387208
AbstractArticlePDF–1.2M
12.
Cdc37 engages in stable, S14A mutation-reinforced association with the most atypical member of the yeast kinome, Cdk-activating kinase (Cak1)
Stefan Millson, Patricija van Oosten-Hawle, Mohammed A. Alkuriji, Andrew Truman, Marco Siderius, Peter W. Piper
Cell Stress Chaperones. 2014 Sep; 19(5): 695–703. Published online 2014 Jan 23. doi: 10.1007/s12192-014-0497-4
PMCID:
PMC4147075
AbstractArticlePDF–1.7M
13.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
14.
Principles of cotranslational ubiquitination and quality control at the ribosome
Stefanie Duttler, Sebastian Pechmann, Judith Frydman
Mol Cell. Author manuscript; available in PMC 2014 May 9.
Published in final edited form as: Mol Cell. 2013 May 9; 50(3): 10.1016/j.molcel.2013.03.010. Published online 2013 Apr 11. doi: 10.1016/j.molcel.2013.03.010
PMCID:
PMC3886275
AbstractArticlePDF–3.1M
15.
Activation of the Smk1 Mitogen-Activated Protein Kinase by Developmentally Regulated Autophosphorylation
Elizabeth Whinston, Gregory Omerza, Amrita Singh, Chong Wai Tio, Edward Winter
Mol Cell Biol. 2013 Feb; 33(4): 688–700. doi: 10.1128/MCB.00973-12
PMCID:
PMC3571338
AbstractArticlePDF–2.0M
16.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
17.
Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes
Joseph Fasolo, Andrea Sboner, Mark G.F. Sun, Haiyuan Yu, Rui Chen, Donald Sharon, Philip M. Kim, Mark Gerstein, Michael Snyder
Genes Dev. 2011 Apr; 25(7): 767–778. doi: 10.1101/gad.1998811
PMCID:
PMC3070938
AbstractArticlePDF–1.2M
18.
Reconstitution and Protein Composition Analysis of Endocytic Actin Patches
Alphée Michelot, Michael Costanzo, Ali Sarkeshik, Charles Boone, John R. Yates, III, David G. Drubin
Curr Biol. Author manuscript; available in PMC 2011 Nov 9.
Published in final edited form as: Curr Biol. 2010 Nov 9; 20(21): 1890–1899. Published online 2010 Oct 28. doi: 10.1016/j.cub.2010.10.016
PMCID:
PMC2998891
AbstractArticlePDF–2.6M
19.
Functional Organization of the S. cerevisiae Phosphorylation Network
Dorothea Fiedler, Hannes Braberg, Monika Mehta, Gal Chechik, Gerard Cagney, Paromita Mukherjee, Andrea C. Silva, Michael Shales, Sean R. Collins, Sake van Wageningen, Patrick Kemmeren, Frank C. P. Holstege, Jonathan S. Weissman, Michael-Christopher Keogh, Daphne Koller, Kevan M. Shokat, Nevan J. Krogan
Cell. Author manuscript; available in PMC 2010 Apr 19.
Published in final edited form as: Cell. 2009 Mar 6; 136(5): 952–963. doi: 10.1016/j.cell.2008.12.039
PMCID:
PMC2856666
AbstractArticlePDF–3.9M
20.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M

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