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Select item 104378211.

Characterization of a novel interaction of the Nup159 nucleoporin with asymmetrically localized spindle pole body proteins and its link with autophagy

Inés García de Oya, Javier Manzano-López, Alejandra Álvarez-Llamas, María de la Paz Vázquez-Aroca, Cristina Cepeda-García, Fernando Monje-Casas

PLoS Biol. 2023 Aug; 21(8): e3002224. Published online 2023 Aug 3. doi: 10.1371/journal.pbio.3002224

PMCID:: PMC10437821

Abstract Article PDF–2.9M

Select item 102333682.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98800273.

The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex

Mashun Onishi, Mitsutaka Kubota, Lan Duan, Yuan Tian, Koji Okamoto

Life Sci Alliance. 2023 Apr; 6(4): e202201640. Published online 2023 Jan 25. doi: 10.26508/lsa.202201640

PMCID:: PMC9880027

Abstract Article PDF–3.2M

Select item 96739664.

Atg39 binding to the inner nuclear membrane triggers nuclear envelope deformation in piecemeal macronucleophagy

Keisuke Mochida, Hitoshi Nakatogawa

Autophagy. 2022; 18(12): 3046–3047. Published online 2022 Apr 29. doi: 10.1080/15548627.2022.2069957

PMCID:: PMC9673966

Abstract Article PDF–235K

Select item 96309865.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 91411897.

A High-Copy Suppressor Screen Reveals a Broad Role of Prefoldin-like Bud27 in the TOR Signaling Pathway in Saccharomyces cerevisiae

Francisco Gutiérrez-Santiago, María Cintas-Galán, Manuel Martín-Expósito, Maria del Carmen Mota-Trujillo, Cristina Cobo-Huesa, Jorge Perez-Fernandez, Francisco Navarro Gómez

Genes (Basel) 2022 May; 13(5): 748. Published online 2022 Apr 24. doi: 10.3390/genes13050748

PMCID:: PMC9141189

Abstract Article PDF–1.3M

Select item 88331628.

ER-phagy requires the assembly of actin at sites of contact between the cortical ER and endocytic pits

Dongmei Liu, Muriel Mari, Xia Li, Fulvio Reggiori, Susan Ferro-Novick, Peter Novick

Proc Natl Acad Sci U S A. 2022 Feb 8; 119(6): e2117554119. Published online 2022 Jan 31. doi: 10.1073/pnas.2117554119

PMCID:: PMC8833162

Abstract Article PDF–2.4M

Select item 87891989.

Atg39 links and deforms the outer and inner nuclear membranes in selective autophagy of the nucleus

Keisuke Mochida, Toshifumi Otani, Yuto Katsumata, Hiromi Kirisako, Chika Kakuta, Tetsuya Kotani, Hitoshi Nakatogawa

J Cell Biol. 2022 Feb 7; 221(2): e202103178. Published online 2022 Jan 21. doi: 10.1083/jcb.202103178

PMCID:: PMC8789198

Abstract Article PDF–6.5M

Select item 857501810.

Atg39 selectively captures inner nuclear membrane into lumenal vesicles for delivery to the autophagosome

Sunandini Chandra, Philip J. Mannino, David J. Thaller, Nicholas R. Ader, Megan C. King, Thomas J. Melia, C. Patrick Lusk

J Cell Biol. 2021 Dec 6; 220(12): e202103030. Published online 2021 Oct 29. doi: 10.1083/jcb.202103030

PMCID:: PMC8575018

Abstract Article PDF–8.8M

Select item 818493711.

Msn2/4 transcription factors positively regulate expression of Atg39 ER-phagy receptor

Tomoaki Mizuno, Kenji Irie

Sci Rep. 2021; 11: 11919. Published online 2021 Jun 7. doi: 10.1038/s41598-021-91480-0

PMCID:: PMC8184937

Abstract Article PDF–2.5M

Select item 774405012.

Characterization of constitutive ER-phagy of excess membrane proteins

Zhanna Lipatova, Valeriya Gyurkovska, Sarah F. Zhao, Nava Segev

PLoS Genet. 2020 Dec; 16(12): e1009255. Published online 2020 Dec 4. doi: 10.1371/journal.pgen.1009255

PMCID:: PMC7744050

Abstract Article PDF–4.0M

Select item 756374913.

Nuclear envelope–vacuole contacts mitigate nuclear pore complex assembly stress

Christopher L. Lord, Susan R. Wente

J Cell Biol. 2020 Dec 7; 219(12): e202001165. Published online 2020 Oct 14. doi: 10.1083/jcb.202001165

PMCID:: PMC7563749

Abstract Article PDF–7.1M

Select item 754412314.

Snf1 AMPK positively regulates ER-phagy via expression control of Atg39 autophagy receptor in yeast ER stress response

Tomoaki Mizuno, Kei Muroi, Kenji Irie

PLoS Genet. 2020 Sep; 16(9): e1009053. Published online 2020 Sep 28. doi: 10.1371/journal.pgen.1009053

PMCID:: PMC7544123

Abstract Article PDF–2.7M

Select item 733748815.

TORC1 inactivation stimulates autophagy of nucleoporin and nuclear pore complexes

Yui Tomioka, Tetsuya Kotani, Hiromi Kirisako, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Yoshinori Ohsumi, Hitoshi Nakatogawa

J Cell Biol. 2020 Jul 6; 219(7): e201910063. Published online 2020 May 26. doi: 10.1083/jcb.201910063

PMCID:: PMC7337488

Abstract Article PDF–4.0M

Select item 713822216.

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue

Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622

PMCID:: PMC7138222

Abstract Article PDF–8.0M

Select item 688687317.

AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvation

Jianhui Li, Michal Breker, Morven Graham, Maya Schuldiner, Mark Hochstrasser

PLoS Genet. 2019 Nov; 15(11): e1008387. Published online 2019 Nov 18. doi: 10.1371/journal.pgen.1008387

PMCID:: PMC6886873

Abstract Article PDF–5.1M

Select item 661571018.

The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel

Nature. Author manuscript; available in PMC 2019 Jul 9.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.

PMCID:: PMC6615710

Abstract Article PDF–424K

Select item 646250219.

Analysis of autophagy activated during changes in carbon source availability in yeast cells

Ryo Iwama, Yoshinori Ohsumi

J Biol Chem. 2019 Apr 5; 294(14): 5590–5603. Published online 2019 Feb 12. doi: 10.1074/jbc.RA118.005698

PMCID:: PMC6462502

Abstract Article PDF–4.4M

Select item 608093220.

CLIP and cohibin separate rDNA from nucleolar proteins destined for degradation by nucleophagy

Md. Golam Mostofa, Muhammad Arifur Rahman, Naoki Koike, Akter MST Yeasmin, Nafisa Islam, Talukdar Muhammad Waliullah, Shun Hosoyamada, Mitsugu Shimobayashi, Takehiko Kobayashi, Michael N. Hall, Takashi Ushimaru

J Cell Biol. 2018 Aug 6; 217(8): 2675–2690. doi: 10.1083/jcb.201706164

PMCID:: PMC6080932

Abstract Article PDF–3.1M

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