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Items: 1 to 20 of 63

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Enhanced sucrose fermentation by introduction of heterologous sucrose transporter and invertase into Clostridium beijerinckii for acetone–butanol–ethanol production
Lihua Lin, Zhikai Zhang, Hongchi Tang, Yuan Guo, Bingqing Zhou, Yi Liu, Ribo Huang, Liqin Du, Hao Pang
R Soc Open Sci. 2021 Sep; 8(9): 201858. Published online September 22, 2021. doi: 10.1098/rsos.201858
PMCID:
PMC8456130
AbstractArticlePDF–956K
5.
Optogenetic Tools for Control of Public Goods in Saccharomyces cerevisiae
Neydis Moreno Morales, Michael T. Patel, Cameron J. Stewart, Kieran Sweeney, Megan N. McClean
mSphere. 2021 Jul-Aug; 6(4): e00581-21. Published online 2021 Aug 25. doi: 10.1128/mSphere.00581-21
PMCID:
PMC8386412
AbstractArticlePDF–1.6M
6.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
7.
Mig1 localization exhibits biphasic behavior which is controlled by both metabolic and regulatory roles of the sugar kinases
Gregor W. Schmidt, Niek Welkenhuysen, Tian Ye, Marija Cvijovic, Stefan Hohmann
Mol Genet Genomics. 2020; 295(6): 1489–1500. Published online 2020 Sep 19. doi: 10.1007/s00438-020-01715-4
PMCID:
PMC7524853
AbstractArticlePDF–1.3M
8.
Fine-Tuning of Energy Levels Regulates SUC2 via a SNF1-Dependent Feedback Loop
Sebastian Persson, Niek Welkenhuysen, Sviatlana Shashkova, Marija Cvijovic
Front Physiol. 2020; 11: 954. Published online 2020 Aug 14. doi: 10.3389/fphys.2020.00954
PMCID:
PMC7456839
AbstractArticlePDF–6.2M
9.
Noncanonical regulation of phosphatidylserine metabolism by a Sec14-like protein and a lipid kinase
Yaxi Wang, Peihua Yuan, Aby Grabon, Ashutosh Tripathi, Dongju Lee, Martin Rodriguez, Max Lönnfors, Michal Eisenberg-Bord, Zehua Wang, Sin Man Lam, Maya Schuldiner, Vytas A. Bankaitis
J Cell Biol. 2020 May 4; 219(5): e201907128. Published online 2020 Apr 17. doi: 10.1083/jcb.201907128
PMCID:
PMC7199851
AbstractArticlePDF–6.7M
10.
Direct Production of Difructose Anhydride IV from Sucrose by Co-fermentation of Recombinant Yeasts
Hyunjun Ko, Jung-Hoon Bae, Bong Hyun Sung, Mi-Jin Kim, Soon-Ho Park, Jung-Hoon Sohn
Sci Rep. 2019; 9: 15980. Published online 2019 Nov 4. doi: 10.1038/s41598-019-52373-5
PMCID:
PMC6828762
AbstractArticlePDF–1.3M
11.
A secretion-enhancing cis regulatory targeting element (SECReTE) involved in mRNA localization and protein synthesis
Osnat Cohen-Zontag, Camila Baez, Lisha Qiu Jin Lim, Tsviya Olender, Dvir Schirman, Dvir Dahary, Yitzhak Pilpel, Jeffrey E. Gerst
PLoS Genet. 2019 Jul; 15(7): e1008248. Published online 2019 Jul 1. doi: 10.1371/journal.pgen.1008248
PMCID:
PMC6625729
AbstractArticlePDF–3.3M
12.
Bioconversion of Beet Molasses to Alpha-Galactosidase and Ethanol
María-Efigenia Álvarez-Cao, María-Esperanza Cerdán, María-Isabel González-Siso, Manuel Becerra
Front Microbiol. 2019; 10: 405. Published online 2019 Mar 7. doi: 10.3389/fmicb.2019.00405
PMCID:
PMC6416216
AbstractArticlePDF–5.0M
13.
Genome-Wide Studies of Rho5-Interacting Proteins That Are Involved in Oxidant-Induced Cell Death in Budding Yeast
Komudi Singh, Mid Eum Lee, Maryam Entezari, Chan-Hun Jung, Yeonsoo Kim, Youngmin Park, Jack D. Fioretti, Won-Ki Huh, Hay-Oak Park, Pil Jung Kang
G3 (Bethesda) 2019 Mar; 9(3): 921–931. Published online 2019 Jan 22. doi: 10.1534/g3.118.200887
PMCID:
PMC6404601
AbstractArticlePDF–1.9M
14.
The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A
Bahram Samanfar, Kristina Shostak, Houman Moteshareie, Maryam Hajikarimlou, Sarah Shaikho, Katayoun Omidi, Mohsen Hooshyar, Daniel Burnside, Imelda Galván Márquez, Tom Kazmirchuk, Thet Naing, Paula Ludovico, Anna York-Lyon, Kama Szereszewski, Cindy Leung, Jennifer Yixin Jin, Rami Megarbane, Myron L. Smith, Mohan Babu, Martin Holcik, Ashkan Golshani
PeerJ. 2017; 5: e4037. Published online 2017 Nov 14. doi: 10.7717/peerj.4037
PMCID:
PMC5691786
AbstractArticlePDF–1.0M
15.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
16.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
17.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
18.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
19.
The genetics of a putative social trait in natural populations of yeast
G O Bozdag, D Greig
Mol Ecol. 2014 Oct; 23(20): 5061–5071. Published online 2014 Oct 4. doi: 10.1111/mec.12904
PMCID:
PMC4285311
AbstractArticlePDF–235K
20.
Translation- and SRP-independent mRNA targeting to the endoplasmic reticulum in the yeast Saccharomyces cerevisiae
Judith Kraut-Cohen, Evgenia Afanasieva, Liora Haim-Vilmovsky, Boris Slobodin, Ido Yosef, Eitan Bibi, Jeffrey E. Gerst
Mol Biol Cell. 2013 Oct 1; 24(19): 3069–3084. doi: 10.1091/mbc.E13-01-0038
PMCID:
PMC3784381
AbstractArticlePDF–3.9M

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