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Items: 1 to 20 of 31

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
The Rad51 paralogs facilitate a novel DNA strand specific damage tolerance pathway
Joel C. Rosenbaum, Braulio Bonilla, Sarah R. Hengel, Tony M. Mertz, Benjamin W. Herken, Hinke G. Kazemier, Catherine A. Pressimone, Timothy C. Ratterman, Ellen MacNary, Alessio De Magis, Youngho Kwon, Stephen K. Godin, Bennett Van Houten, Daniel P. Normolle, Patrick Sung, Subha R. Das, Katrin Paeschke, Steven A. Roberts, Andrew P. VanDemark, Kara A. Bernstein
Nat Commun. 2019; 10: 3515. Published online 2019 Aug 5. doi: 10.1038/s41467-019-11374-8
PMCID:
PMC6683157
AbstractArticlePDF–1.3M
4.
Mapping DNA damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics
J Javier Díaz‐Mejía, Albi Celaj, Joseph C Mellor, Atina Coté, Attila Balint, Brandon Ho, Pritpal Bansal, Fatemeh Shaeri, Marinella Gebbia, Jochen Weile, Marta Verby, Anna Karkhanina, YiFan Zhang, Cassandra Wong, Justin Rich, D'Arcy Prendergast, Gaurav Gupta, Sedide Öztürk, Daniel Durocher, Grant W Brown, Frederick P Roth
Mol Syst Biol. 2018 May; 14(5): e7985. Published online 2018 May 28. doi: 10.15252/msb.20177985
PMCID:
PMC5974512
AbstractArticlePDF–2.2M
5.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
6.
Structural basis for the functional role of the Shu complex in homologous recombination
Shicheng Zhang, Linlin Wang, Ye Tao, Tuya Bai, Rong Lu, Tianlong Zhang, Jiangye Chen, Jianping Ding
Nucleic Acids Res. 2017 Dec 15; 45(22): 13068–13079. Published online 2017 Oct 24. doi: 10.1093/nar/gkx992
PMCID:
PMC5727457
AbstractArticlePDF–9.2M
7.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
8.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
9.
The Shu complex promotes error-free tolerance of alkylation-induced base excision repair products
Stephen K. Godin, Zhuying Zhang, Benjamin W. Herken, James W. Westmoreland, Alison G. Lee, Michael J. Mihalevic, Zhongxun Yu, Robert W. Sobol, Michael A. Resnick, Kara A. Bernstein
Nucleic Acids Res. 2016 Sep 30; 44(17): 8199–8215. Published online 2016 Jun 13. doi: 10.1093/nar/gkw535
PMCID:
PMC5041462
AbstractArticlePDF–9.6M
10.
Promotion of Homologous Recombination by SWS-1 in Complex with RAD-51 Paralogs in Caenorhabditis elegans
T. Brooke McClendon, Meghan R. Sullivan, Kara A. Bernstein, Judith L. Yanowitz
Genetics. 2016 May; 203(1): 133–145. Published online 2016 Mar 1. doi: 10.1534/genetics.115.185827
PMCID:
PMC4858769
AbstractArticlePDF–2.0M
11.
Recombination-Mediated Telomere Maintenance in Saccharomyces cerevisiae Is Not Dependent on the Shu Complex
Paula M. van Mourik, Jannie de Jong, Danielle Agpalo, Clémence Claussin, Rodney Rothstein, Michael Chang
PLoS One. 2016; 11(3): e0151314. Published online 2016 Mar 14. doi: 10.1371/journal.pone.0151314
PMCID:
PMC4790948
AbstractArticlePDF–1.0M
12.
Promotion of presynaptic filament assembly by the ensemble of S. cerevisiae Rad51 paralogues with Rad52
William A. Gaines, Stephen K. Godin, Faiz F. Kabbinavar, Timsi Rao, Andrew P. VanDemark, Patrick Sung, Kara A. Bernstein
Nat Commun. 2015; 6: 7834. Published online 2015 Jul 28. doi: 10.1038/ncomms8834
PMCID:
PMC4525180
AbstractArticlePDF–1.1M
13.
Evolutionary and Functional Analysis of the Invariant SWIM Domain in the Conserved Shu2/SWS1 Protein Family from Saccharomyces cerevisiae to Homo sapiens
Stephen K. Godin, Camille Meslin, Faiz Kabbinavar, Dominique S. Bratton-Palmer, Christina Hornack, Michael J. Mihalevic, Kyle Yoshida, Meghan Sullivan, Nathan L. Clark, Kara A. Bernstein
Genetics. 2015 Apr; 199(4): 1023–1033. Published online 2015 Feb 5. doi: 10.1534/genetics.114.173518
PMCID:
PMC4391554
AbstractArticlePDF–1.8M
14.
A new protein complex promoting the assembly of Rad51 filaments
Hiroyuki Sasanuma, Maki S. Tawaramoto, Jessica P. Lao, Harumi Hosaka, Eri Sanda, Mamoru Suzuki, Eiki Yamashita, Neil Hunter, Miki Shinohara, Atsushi Nakagawa, Akira Shinohara
Nat Commun. Author manuscript; available in PMC 2015 Mar 10.
Published in final edited form as: Nat Commun. 2013; 4: 1676. doi: 10.1038/ncomms2678
PMCID:
PMC4353811
AbstractArticlePDF–2.2M
15.
Synthetic Cytotoxicity: Digenic Interactions with TEL1/ATM Mutations Reveal Sensitivity to Low Doses of Camptothecin
Xuesong Li, Nigel J. O’Neil, Noushin Moshgabadi, Philip Hieter
Genetics. 2014 Jun; 197(2): 611–623. Published online 2014 Mar 20. doi: 10.1534/genetics.114.161307
PMCID:
PMC4063919
AbstractArticlePDF–2.2M
16.
Structural Analysis of Shu Proteins Reveals a DNA Binding Role Essential for Resisting Damage
Yuyong Tao, Xu Li, Yiwei Liu, Jianbin Ruan, Shali Qi, Liwen Niu, Maikun Teng
J Biol Chem. 2012 Jun 8; 287(24): 20231–20239. Published online 2012 Mar 30. doi: 10.1074/jbc.M111.334698
PMCID:
PMC3370205
AbstractArticlePDF–2.3M
17.
Epistasis analysis between homologous recombination genes in Saccharomyces cerevisiae identifies multiple repair pathways for Sgs1, Mus81-Mms4 and RNase H2
Miki Ii, Tatsuya Ii, Larisa I. Mironova, Steven J. Brill
Mutat Res. Author manuscript; available in PMC 2012 Sep 1.
Published in final edited form as: Mutat Res. 2011 Sep 1; 714(1-2): 33–43. Published online 2011 Jun 30. doi: 10.1016/j.mrfmmm.2011.06.007
PMCID:
PMC3162113
AbstractArticlePDF–3.1M
18.
The Shu complex, which contains Rad51 paralogues, promotes DNA repair through inhibition of the Srs2 anti-recombinase
Kara A. Bernstein, Robert J.D. Reid, Ivana Sunjevaric, Kimberly Demuth, Rebecca C. Burgess, Rodney Rothstein
Mol Biol Cell. 2011 May 1; 22(9): 1599–1607. doi: 10.1091/mbc.E10-08-0691
PMCID:
PMC3084681
AbstractArticlePDF–2.0M
19.
The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components
Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter
PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057
PMCID:
PMC3084213
AbstractArticlePDF–710K
20.
Selective ploidy ablation, a high-throughput plasmid transfer protocol, identifies new genes affecting topoisomerase I–induced DNA damage
Robert J.D. Reid, Sergio González-Barrera, Ivana Sunjevaric, David Alvaro, Samantha Ciccone, Marisa Wagner, Rodney Rothstein
Genome Res. 2011 Mar; 21(3): 477–486. doi: 10.1101/gr.109033.110
PMCID:
PMC3044861
AbstractArticlePDF–901K

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