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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 92860232.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 78128694.

An open interface in the pre-80S ribosome coordinated by ribosome assembly factors Tsr1 and Dim1 enables temporal regulation of Fap7

Jay Rai, Melissa D. Parker, Haina Huang, Stefan Choy, Homa Ghalei, Matthew C. Johnson, Katrin Karbstein, M. Elizabeth Stroupe

RNA. 2021 Feb; 27(2): 221–233. doi: 10.1261/rna.077610.120

PMCID:: PMC7812869

Abstract Article PDF–17M

Select item 73864335.

Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell

Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone

Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.

Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855

PMCID:: PMC7386433

Abstract Article PDF–1.0M

Select item 66488956.

Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME

Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy

Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317

PMCID:: PMC6648895

Abstract Article PDF–14M

Select item 61922597.

The ATPase Fap7 Tests the Ability to Carry Out Translocation-Like Conformational Changes and Releases Dim1 During 40S Ribosome Maturation.

Homa Ghalei, Juliette Trepreau, Jason C. Collins, Hari Bhaskaran, Bethany S. Strunk, Katrin Karbstein

Mol Cell. Author manuscript; available in PMC 2018 Oct 17.

Published in final edited form as: Mol Cell. 2017 Sep 21; 67(6): 990–1000.e3. Published online 2017 Sep 7. doi: 10.1016/j.molcel.2017.08.007

Correction in:: Mol Cell. 2017 Dec 21; 68(6): 1155.

PMCID:: PMC6192259

Abstract Article PDF–1.0M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 57383579.

Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly

Miriam Sturm, Jingdong Cheng, Jochen Baßler, Roland Beckmann, Ed Hurt

Nat Commun. 2017; 8: 2213. Published online 2017 Dec 20. doi: 10.1038/s41467-017-02199-4

PMCID:: PMC5738357

Abstract Article PDF–3.1M

Select item 573750310.

The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles

Kamila Belhabich-Baumas, Clément Joret, Beáta E. Jády, Célia Plisson-Chastang, Ramtin Shayan, Christophe Klopp, Anthony K. Henras, Yves Henry, Annie Mougin

Nucleic Acids Res. 2017 Oct 13; 45(18): 10824–10836. Published online 2017 Aug 25. doi: 10.1093/nar/gkx734

PMCID:: PMC5737503

Abstract Article PDF–5.0M

Select item 564803211.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 514860512.

Prefabrication of a ribosomal protein subcomplex essential for eukaryotic ribosome formation

Cohue Peña, Sabina Schütz, Ute Fischer, Yiming Chang, Vikram G Panse

eLife. 2016; 5: e21755. Published online 2016 Dec 8. doi: 10.7554/eLife.21755

PMCID:: PMC5148605

Abstract Article PDF–5.6M

Select item 484875813.

An inter‐species protein–protein interaction network across vast evolutionary distance

Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal

Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484

PMCID:: PMC4848758

Abstract Article PDF–2.1M

Select item 473339714.

ATPase modulated stress granules contain a diverse proteome and substructure

Saumya Jain, Joshua R. Wheeler, Robert W. Walters, Anurag Agrawal, Anthony Barsic, Roy Parker

Cell. Author manuscript; available in PMC 2017 Jan 28.

Published in final edited form as: Cell. 2016 Jan 28; 164(3): 487–498. Published online 2016 Jan 14. doi: 10.1016/j.cell.2015.12.038

PMCID:: PMC4733397

Abstract Article PDF–2.2M

Select item 471892215.

Systematic humanization of yeast genes reveals conserved functions and genetic modularity

Aashiq H. Kachroo, Jon M. Laurent, Christopher M. Yellman, Austin G. Meyer, Claus O. Wilke, Edward M. Marcotte

Science. Author manuscript; available in PMC 2016 Jan 20.

Published in final edited form as: Science. 2015 May 22; 348(6237): 921–925. doi: 10.1126/science.aaa0769

PMCID:: PMC4718922

Abstract Article PDF–2.0M

Select item 461603916.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 405396417.

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim

Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13

PMCID:: PMC4053964

Abstract Article PDF–1.7M

Select item 401946618.

RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis

Jérôme Loc'h, Magali Blaud, Stéphane Réty, Simon Lebaron, Patrick Deschamps, Joseph Bareille, Julie Jombart, Julien Robert-Paganin, Lila Delbos, Florian Chardon, Elodie Zhang, Clément Charenton, David Tollervey, Nicolas Leulliot

PLoS Biol. 2014 May; 12(5): e1001860. Published online 2014 May 13. doi: 10.1371/journal.pbio.1001860

PMCID:: PMC4019466

Abstract Article PDF–2.5M

Select item 361546119.

Joining of 60S subunits and a translation-like cycle in 40S ribosome maturation

Bethany S. Strunk, Megan N. Novak, Crystal L. Young, Katrin Karbstein

Cell. Author manuscript; available in PMC 2013 Jul 6.

Published in final edited form as: Cell. 2012 Jul 6; 150(1): 111–121. doi: 10.1016/j.cell.2012.04.044

PMCID:: PMC3615461

Abstract Article PDF–3.4M

Select item 361359020.

Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast

Min-Kyung Sung, Gyubum Lim, Dae-Gwan Yi, Yeon Ji Chang, Eun Bin Yang, KiYoung Lee, Won-Ki Huh

Genome Res. 2013 Apr; 23(4): 736–746. doi: 10.1101/gr.148346.112

PMCID:: PMC3613590

Abstract Article PDF–1.7M

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