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Items: 1 to 20 of 109

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
AbstractArticlePDF–1.7M
2.
PCNA Unloading Is Crucial for the Bypass of DNA Lesions Using Homologous Recombination
Matan Arbel-Groissman, Batia Liefshitz, Nir Katz, Maxim Kuryachiy, Martin Kupiec
Int J Mol Sci. 2024 Mar; 25(6): 3359. Published online 2024 Mar 15. doi: 10.3390/ijms25063359
PMCID:
PMC10970473
AbstractArticlePDF–2.4M
3.
Structure of the PCNA unloader Elg1-RFC
Fengwei Zheng, Nina Y. Yao, Roxana E. Georgescu, Huilin Li, Michael E. O’Donnell
Sci Adv. 2024 Mar 1; 10(9): eadl1739. Published online 2024 Mar 1. doi: 10.1126/sciadv.adl1739
PMCID:
PMC10906927
AbstractArticlePDF–4.3M
4.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
5.
Elevated MSH2 MSH3 expression interferes with DNA metabolism in vivo
Melisa Medina-Rivera, Samantha Phelps, Madhumita Sridharan, Jordan Becker, Natalie A Lamb, Charanya Kumar, Mark D Sutton, Anja Bielinsky, Lata Balakrishnan, Jennifer A Surtees
Nucleic Acids Res. 2023 Dec 11; 51(22): 12185–12206. Published online 2023 Nov 1. doi: 10.1093/nar/gkad934
PMCID:
PMC10711559
AbstractArticlePDF–3.2M
6.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
7.
PCNA recruits cohesin loader Scc2 to ensure sister chromatid cohesion
Ivan Psakhye, Ryotaro Kawasumi, Takuya Abe, Kouji Hirota, Dana Branzei
Nat Struct Mol Biol. 2023; 30(9): 1286–1294. Published online 2023 Aug 17. doi: 10.1038/s41594-023-01064-x
PMCID:
PMC10497406
AbstractArticlePDF–9.2M
8.
Control of telomere length in yeast by SUMOylated PCNA and the Elg1 PCNA unloader
Pragyan Singh, Inbal Gazy, Martin Kupiec
eLife. 2023; 12: RP86990. Published online 2023 Aug 2. doi: 10.7554/eLife.86990
PMCID:
PMC10396338
AbstractArticlePDF–1.6M
9.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
AbstractArticlePDF–5.9M
10.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
11.
S. cerevisiae Cells Can Grow without the Pds5 Cohesin Subunit
Karan Choudhary, Ziv Itzkovich, Elisa Alonso-Perez, Hend Bishara, Barbara Dunn, Gavin Sherlock, Martin Kupiec
mBio. 2022 Jul-Aug; 13(4): e01420-22. Published online 2022 Jun 16. doi: 10.1128/mbio.01420-22
PMCID:
PMC9426526
AbstractArticlePDF–3.3M
12.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
13.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
14.
The ubiquitin–proteasome system regulates meiotic chromosome organization
Xiao Yang, Meihui Song, Ying Wang, Taicong Tan, Zhongyu Tian, Binyuan Zhai, Xuan Yang, Yingjin Tan, Yanding Cao, Shaojun Dai, Shunxin Wang, Liangran Zhang
Proc Natl Acad Sci U S A. 2022 Apr 26; 119(17): e2106902119. Published online 2022 Apr 19. doi: 10.1073/pnas.2106902119
PMCID:
PMC9169913
AbstractArticlePDF–2.1M
15.
Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast
Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu
Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680
PMCID:
PMC8421204
AbstractArticlePDF–2.9M
16.
iTARGEX analysis of yeast deletome reveals novel regulators of transcriptional buffering in S phase and protein turnover
Jia-Hsin Huang, You-Rou Liao, Tzu-Chieh Lin, Cheng-Hung Tsai, Wei-Yun Lai, Yang-Kai Chou, Jun-Yi Leu, Huai-Kuang Tsai, Cheng-Fu Kao
Nucleic Acids Res. 2021 Jul 21; 49(13): 7318–7329. Published online 2021 Jul 1. doi: 10.1093/nar/gkab555
PMCID:
PMC8287957
AbstractArticlePDF–4.0M
17.
Ligation of newly replicated DNA controls the timing of DNA mismatch repair
Gloria X. Reyes, Anna Kolodziejczak, Lovely Jael Paul Solomon Devakumar, Takashi Kubota, Richard D. Kolodner, Christopher D. Putnam, Hans Hombauer
Curr Biol. Author manuscript; available in PMC 2021 Jul 15.
Published in final edited form as: Curr Biol. 2021 Mar 22; 31(6): 1268–1276.e6. Published online 2021 Jan 7. doi: 10.1016/j.cub.2020.12.018
PMCID:
PMC8281387
AbstractArticlePDF–1.5M
18.
A novel role for Dun1 in the regulation of origin firing upon hyper-acetylation of H3K56
Lihi Gershon, Martin Kupiec
PLoS Genet. 2021 Feb; 17(2): e1009391. Published online 2021 Feb 18. doi: 10.1371/journal.pgen.1009391
PMCID:
PMC7924802
AbstractArticlePDF–2.3M
19.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
20.
PCNA antagonizes cohesin-dependent roles in genomic stability
Caitlin M. Zuilkoski, Robert V. Skibbens
PLoS One. 2020; 15(10): e0235103. Published online 2020 Oct 19. doi: 10.1371/journal.pone.0235103
PMCID:
PMC7571713
AbstractArticlePDF–2.5M

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