PMC Links for GEO Profiles (Select 6367563) - PMC

Select item 104319201.

Saccharomyces cerevisiae DJ-1 paralogs maintain genome integrity through glycation repair of nucleic acids and proteins

Gautam Susarla, Priyanka Kataria, Amrita Kundu, Patrick D'Silva

eLife. 2023; 12: e88875. Published online 2023 Aug 7. doi: 10.7554/eLife.88875

PMCID:: PMC10431920

Abstract Article PDF–5.1M

Select item 92098112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 70262863.

Redox-dependent regulation of mitochondrial dynamics by DJ-1 paralogs in Saccharomyces cerevisiae

Kondalarao Bankapalli, Vinaya Vishwanathan, Gautam Susarla, Ningaraju Sunayana, SreeDivya Saladi, Divya Peethambaram, Patrick D'Silva

Redox Biol. 2020 May; 32: 101451. Published online 2020 Feb 7. doi: 10.1016/j.redox.2020.101451

PMCID:: PMC7026286

Abstract Article PDF–3.0M

Select item 56618854.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002545.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 47333976.

ATPase modulated stress granules contain a diverse proteome and substructure

Saumya Jain, Joshua R. Wheeler, Robert W. Walters, Anurag Agrawal, Anthony Barsic, Roy Parker

Cell. Author manuscript; available in PMC 2017 Jan 28.

Published in final edited form as: Cell. 2016 Jan 28; 164(3): 487–498. Published online 2016 Jan 14. doi: 10.1016/j.cell.2015.12.038

PMCID:: PMC4733397

Abstract Article PDF–2.2M

Select item 46648827.

Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated

Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann

Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15

PMCID:: PMC4664882

Abstract Article PDF–2.3M

Select item 46463098.

Robust Glyoxalase activity of Hsp31, a ThiJ/DJ-1/PfpI Family Member Protein, Is Critical for Oxidative Stress Resistance in Saccharomyces cerevisiae

Kondalarao Bankapalli, SreeDivya Saladi, Sahezeel S. Awadia, Arvind Vittal Goswami, Madhuja Samaddar, Patrick D'Silva

J Biol Chem. 2015 Oct 30; 290(44): 26491–26507. Published online 2015 Sep 14. doi: 10.1074/jbc.M115.673624

PMCID:: PMC4646309

Abstract Article PDF–3.5M

Select item 46055299.

Absence of the Yeast Hsp31 Chaperones of the DJ-1 Superfamily Perturbs Cytoplasmic Protein Quality Control in Late Growth Phase

Ingo Amm, Derrick Norell, Dieter H. Wolf

PLoS One. 2015; 10(10): e0140363. Published online 2015 Oct 14. doi: 10.1371/journal.pone.0140363

PMCID:: PMC4605529

Abstract Article PDF–2.2M

Select item 402492610.

Yeast DJ-1 superfamily members are required for diauxic-shift reprogramming and cell survival in stationary phase

Leonor Miller-Fleming, Pedro Antas, Teresa Faria Pais, Joshua L. Smalley, Flaviano Giorgini, Tiago Fleming Outeiro

Proc Natl Acad Sci U S A. 2014 May 13; 111(19): 7012–7017. Published online 2014 Apr 2. doi: 10.1073/pnas.1319221111

PMCID:: PMC4024926

Abstract Article PDF–1.1M

Select item 379155511.

Quantitative analysis of chaperone network throughput in budding yeast

Philip Brownridge, Craig Lawless, Aishwarya B Payapilly, Karin Lanthaler, Stephen W Holman, Victoria M Harman, Christopher M Grant, Robert J Beynon, Simon J Hubbard

Proteomics. 2013 Apr; 13(8): 1276–1291. Published online 2013 Mar 15. doi: 10.1002/pmic.201200412

PMCID:: PMC3791555

Abstract Article PDF–1.0M

Select item 371081012.

Conformational dynamics control ubiquitin-deubiquitinase interactions and influence in vivo signaling

Aaron H. Phillips, Yingnan Zhang, Christian N. Cunningham, Lijuan Zhou, William F. Forrest, Peter S. Liu, Micah Steffek, James Lee, Christine Tam, Elizabeth Helgason, Jeremy M. Murray, Donald S. Kirkpatrick, Wayne J. Fairbrother, Jacob E. Corn

Proc Natl Acad Sci U S A. 2013 Jul 9; 110(28): 11379–11384. Published online 2013 Jun 25. doi: 10.1073/pnas.1302407110

PMCID:: PMC3710810

Abstract Article PDF–1.0M

Select item 331716013.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Abstract Article PDF–998K

Select item 299835414.

Structure of Hsp33/YOR391Cp from the yeast Saccharomyces cerevisiae

Peng-Chao Guo, Ye-Yun Zhou, Xiao-Xiao Ma, Wei-Fang Li

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Dec 1; 66(Pt 12): 1557–1561. Published online 2010 Nov 16. doi: 10.1107/S1744309110039965

PMCID:: PMC2998354

Abstract Article PDF–1.5M

Select item 274675315.

High Quality Binary Protein Interaction Map of the Yeast Interactome Network

Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2009 Sep 18.

Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684

PMCID:: PMC2746753

Abstract Article PDF–2.2M

Select item 249275116.

A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation

Yu-yi Lin, Yan Qi, Jin-ying Lu, Xuewen Pan, Daniel S. Yuan, Yingming Zhao, Joel S. Bader, Jef D. Boeke

Genes Dev. 2008 Aug 1; 22(15): 2062–2074. doi: 10.1101/gad.1679508

PMCID:: PMC2492751

Abstract Article PDF–1.2M

Select item 34176917.

The 1.8-Å resolution crystal structure of YDR533Cp from Saccharomyces cerevisiae: A member of the DJ-1/ThiJ/PfpI superfamily

Mark A. Wilson, Courtney V. St. Amour, Jennifer L. Collins, Dagmar Ringe, Gregory A. Petsko

Proc Natl Acad Sci U S A. 2004 Feb 10; 101(6): 1531–1536. Published online 2004 Jan 26. doi: 10.1073/pnas.0308089100

PMCID:: PMC341769

Abstract Article PDF–583K

Select item 24066018.

Predicting protein functions from redundancies in large-scale protein interaction networks

Manoj Pratim Samanta, Shoudan Liang

Proc Natl Acad Sci U S A. 2003 Oct 28; 100(22): 12579–12583. Published online 2003 Oct 17. doi: 10.1073/pnas.2132527100

PMCID:: PMC240660

Abstract Article PDF–350K

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