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Select item 114236781.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105481764.

TOR‐mediated Ypt1 phosphorylation regulates autophagy initiation complex assembly

Weijing Yao, Yuting Chen, Yingcong Chen, Pengwei Zhao, Jing Liu, Yi Zhang, Qiang Jiang, Choufei Wu, Yu Xie, Siyu Fan, Miao Ye, Yigang Wang, Yuyao Feng, Xue Bai, Mingzhu Fan, Shan Feng, Juan Wang, Yixian Cui, Hongguang Xia, Cheng Ma, Zhiping Xie, Liqin Zhang, Qiming Sun, Wei Liu, Cong Yi

EMBO J. 2023 Oct; 42(19): e112814. Published online 2023 Aug 28. doi: 10.15252/embj.2022112814

PMCID:: PMC10548176

Abstract Article PDF–19M

Select item 103376035.

The Atg1 complex, Atg9, and Vac8 recruit PI3K complex I to the pre-autophagosomal structure

Kanae Hitomi, Tetsuya Kotani, Nobuo N. Noda, Yayoi Kimura, Hitoshi Nakatogawa

J Cell Biol. 2023 Aug 7; 222(8): e202210017. Published online 2023 Jul 12. doi: 10.1083/jcb.202210017

PMCID:: PMC10337603

Abstract Article PDF–3.5M

Select item 102977006.

The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions

Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman

Mol Cell. Author manuscript; available in PMC 2024 Jun 15.

Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021

PMCID:: PMC10297700

Abstract Article PDF–2.0M

Select item 102410027.

Atg9 interactions via its transmembrane domains are required for phagophore expansion during autophagy

Sabrina Chumpen Ramirez, Rubén Gómez-Sánchez, Pauline Verlhac, Ralph Hardenberg, Eleonora Margheritis, Katia Cosentino, Fulvio Reggiori, Christian Ungermann

Autophagy. 2023; 19(5): 1459–1478. Published online 2022 Nov 10. doi: 10.1080/15548627.2022.2136340

PMCID:: PMC10241002

Abstract Article PDF–3.5M

Select item 101968718.

The dynamin Vps1 mediates Atg9 transport to the sites of autophagosome formation

Henning Arlt, Babu Raman, Yasmina Filali-Mouncef, Yan Hu, Alexandre Leytens, Ralph Hardenberg, Rodrigo Guimarães, Franziska Kriegenburg, Muriel Mari, Iwona I. Smaczynska-de Rooij, Kathryn R. Ayscough, Jörn Dengjel, Christian Ungermann, Fulvio Reggiori

J Biol Chem. 2023 May; 299(5): 104712. Published online 2023 Apr 14. doi: 10.1016/j.jbc.2023.104712

PMCID:: PMC10196871

Abstract Article PDF–2.2M

Select item 99950779.

The TORC1 activates Rpd3L complex to deacetylate Ino80 and H2A.Z and repress autophagy

Xin Li, Qianyun Mei, Qi Yu, Min Wang, Fei He, Duncheng Xiao, Huan Liu, Feng Ge, Xilan Yu, Shanshan Li

Sci Adv. 2023 Mar; 9(10): eade8312. Published online 2023 Mar 8. doi: 10.1126/sciadv.ade8312

PMCID:: PMC9995077

Abstract Article PDF–2.7M

Select item 980994210.

Vacuole fragmentation depends on a novel Atg18-containing retromer-complex

Lisa Marquardt, Matthew Taylor, Florian Kramer, Kerstin Schmitt, Gerhard H. Braus, Oliver Valerius, Michael Thumm

Autophagy. 2023; 19(1): 278–295. Published online 2022 May 15. doi: 10.1080/15548627.2022.2072656

PMCID:: PMC9809942

Abstract Article PDF–5.1M

Select item 950881911.

Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation

Priya Bhutada, Sébastien Favre, Mariam Jaafar, Jutta Hafner, Laura Liesinger, Stefan Unterweger, Karin Bischof, Barbara Darnhofer, Devanarayanan Siva Sankar, Gerald Rechberger, Raghida Abou Merhi, Simon Lebaron, Ruth Birner-Gruenberger, Dieter Kressler, Anthony K Henras, Brigitte Pertschy

Nucleic Acids Res. 2022 Sep 23; 50(17): 10053–10077. Published online 2022 Aug 26. doi: 10.1093/nar/gkac724

PMCID:: PMC9508819

Abstract Article PDF–16M

Select item 920981112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 909736613.

Dimerization-dependent membrane tethering by Atg23 is essential for yeast autophagy

Wayne D. Hawkins, Kelsie A. Leary, Devika Andhare, Hana Popelka, Daniel J. Klionsky, Michael J. Ragusa

Cell Rep. Author manuscript; available in PMC 2022 May 12.

Published in final edited form as: Cell Rep. 2022 Apr 19; 39(3): 110702. doi: 10.1016/j.celrep.2022.110702

PMCID:: PMC9097366

Abstract Article PDF–2.1M

Select item 881466814.

Mechanism of Atg9 recruitment by Atg11 in the cytoplasm-to-vacuole targeting pathway

Nicolas Coudevylle, Bartłomiej Banaś, Verena Baumann, Martina Schuschnig, Anna Zawadzka-Kazimierczuk, Wiktor Koźmiński, Sascha Martens

J Biol Chem. 2022 Feb; 298(2): 101573. Published online 2022 Jan 8. doi: 10.1016/j.jbc.2022.101573

PMCID:: PMC8814668

Abstract Article PDF–2.3M

Select item 880515715.

Mapping Critical Residues in ATG11’s Coiled-Coil 2 Domain that Block Multiple Interactions and Disrupt Selective Autophagy

Mitchell D. Meyer, Jasmine Winzeler, Sophia M. Taylor, Alex Kilgore, Kimberly Edicha, Chase Chitwood, Zachary Spearin, S. K. Nadia Rahman Silvia, Ronith Chakraborty, Jesse E. Smith, Bridget Kennedy, Carson Zois, Hayley Cawthon, Mukiri Gilruth, Steven K. Backues

Front Cell Dev Biol. 2021; 9: 775364. Published online 2022 Jan 18. doi: 10.3389/fcell.2021.775364

PMCID:: PMC8805157

Abstract Article PDF–2.4M

Select item 872666516.

Atg9-centered multi-omics integration reveals new autophagy regulators in Saccharomyces cerevisiae

Di Peng, Chen Ruan, Shanshan Fu, Chengwen He, Jingzhen Song, Hui Li, Yiran Tu, Dachao Tang, Lan Yao, Shaofeng Lin, Ying Shi, Weizhi Zhang, Hao Zhou, Le Zhu, Cong Ma, Cheng Chang, Jie Ma, Zhiping Xie, Chenwei Wang, Yu Xue

Autophagy. 2021; 17(12): 4453–4476. Published online 2021 Mar 15. doi: 10.1080/15548627.2021.1898749

PMCID:: PMC8726665

Abstract Article PDF–8.5M

Select item 869386017.

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

Anne Schreiber, Ben C. Collins, Colin Davis, Radoslav I. Enchev, Angie Sedra, Rocco D’Antuono, Ruedi Aebersold, Matthias Peter

Mol Cell. 2021 Dec 16; 81(24): 5066–5081.e10. doi: 10.1016/j.molcel.2021.10.024

PMCID:: PMC8693860

Abstract Article

Select item 781716218.

Downregulation of autophagy by Met30-mediated Atg9 ubiquitination

Yuchen Feng, Aileen R. Ariosa, Ying Yang, Zehan Hu, Jörn Dengjel, Daniel J. Klionsky

Proc Natl Acad Sci U S A. 2021 Jan 5; 118(1): e2005539118. Published online 2020 Dec 21. doi: 10.1073/pnas.2005539118

PMCID:: PMC7817162

Abstract Article PDF–1.2M

Select item 780987819.

Transmembrane phospholipid translocation mediated by Atg9 is involved in autophagosome formation

Minami Orii, Takuma Tsuji, Yuta Ogasawara, Toyoshi Fujimoto

J Cell Biol. 2021 Mar 1; 220(3): e202009194. Published online 2021 Jan 13. doi: 10.1083/jcb.202009194

PMCID:: PMC7809878

Abstract Article PDF–3.2M

Select item 775150320.

Atg11 is required for initiation of glucose starvation-induced autophagy

Weijing Yao, Yixing Li, Liming Wu, Choufei Wu, Yi Zhang, Jing Liu, Zhiyong He, Xiaoyong Wu, Chenjun Lu, Liefeng Wang, Huiming Zhong, Zhi Hong, Shiming Xu, Wei Liu, Cong Yi

Autophagy. 2020; 16(12): 2206–2218. Published online 2020 Feb 3. doi: 10.1080/15548627.2020.1719724