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Items: 1 to 20 of 196

1.
CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment
Jie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu, Ning Ma, Lingling Zhang, Guangjin Pan, Yibo Qu, Hua Wang, Wei Zhang, Zhichao Miao, Hongjie Yao
Nat Commun. 2024; 15: 5524. Published online 2024 Jul 1. doi: 10.1038/s41467-024-49684-1
PMCID:
PMC11217373
AbstractArticlePDF–5.1M
2.
Systematic assessment of ISWI subunits shows that NURF creates local accessibility for CTCF
Mario Iurlaro, Francesca Masoni, Ilya M. Flyamer, Christiane Wirbelauer, Murat Iskar, Lukas Burger, Luca Giorgetti, Dirk Schübeler
Nat Genet. 2024; 56(6): 1203–1212. Published online 2024 May 30. doi: 10.1038/s41588-024-01767-x
Correction in:
Nat Genet. 2024; 56(11): 2574–2575.
PMCID:
PMC11176080
AbstractArticlePDF–26M
3.
ADNP modulates SINE B2-derived CTCF-binding sites during blastocyst formation in mice
Wen Wang, Rui Gao, Dongxu Yang, Mingli Ma, Ruge Zang, Xiangxiu Wang, Chuan Chen, Xiaochen Kou, Yanhong Zhao, Jiayu Chen, Xuelian Liu, Jiaxu Lu, Ben Xu, Juntao Liu, Yanxin Huang, Chaoqun Chen, Hong Wang, Shaorong Gao, Yong Zhang, Yawei Gao
Genes Dev. 2024 Feb 1; 38(3-4): 168–188. doi: 10.1101/gad.351189.123
PMCID:
PMC10982698
AbstractArticlePDF–2.8M
4.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
5.
Transcriptional regulation of FACT involves Coordination of chromatin accessibility and CTCF binding
Peijun Wang, Na Fan, Wanting Yang, Pengbo Cao, Guojun Liu, Qi Zhao, Pengfei Guo, Xihe Li, Xinhua Lin, Ning Jiang, Buhe Nashun
J Biol Chem. 2024 Jan; 300(1): 105538. Published online 2023 Dec 10. doi: 10.1016/j.jbc.2023.105538
PMCID:
PMC10808957
AbstractArticlePDF–2.9M
6.
Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia
Willem K. Smits, Carlo Vermeulen, Rico Hagelaar, Shunsuke Kimura, Eric M. Vroegindeweij, Jessica G.C.A.M. Buijs-Gladdines, Ellen van de Geer, Marjon J.A.M. Verstegen, Erik Splinter, Simon V. van Reijmersdal, Arjan Buijs, Niels Galjart, Winfried van Eyndhoven, Max van Min, Roland Kuiper, Patrick Kemmeren, Charles G. Mullighan, Wouter de Laat, Jules P.P. Meijerink
Cell Rep. Author manuscript; available in PMC 2023 Dec 26.
Published in final edited form as: Cell Rep. 2023 Apr 25; 42(4): 112373. Published online 2023 Apr 14. doi: 10.1016/j.celrep.2023.112373
PMCID:
PMC10750298
AbstractArticlePDF–3.0M
7.
Outward-oriented sites within clustered CTCF boundaries are key for intra-TAD chromatin interactions and gene regulation
Xiao Ge, Haiyan Huang, Keqi Han, Wangjie Xu, Zhaoxia Wang, Qiang Wu
Nat Commun. 2023; 14: 8101. Published online 2023 Dec 7. doi: 10.1038/s41467-023-43849-0
PMCID:
PMC10703910
AbstractArticlePDF–2.0M
8.
Hnrnpk is essential for embryonic limb bud development as a transcription activator and a collaborator of insulator protein Ctcf
Yuyu Chen, Taifeng Zhou, Zhiheng Liao, Wenjie Gao, Jinna Wu, Shun Zhang, Yongyong Li, Hengyu Liu, Hang Zhou, Caixia Xu, Peiqiang Su
Cell Death Differ. 2023 Oct; 30(10): 2293–2308. Published online 2023 Aug 22. doi: 10.1038/s41418-023-01207-z
PMCID:
PMC10589297
AbstractArticlePDF–16M
9.
Chromatin architectural factor CTCF is essential for progesterone dependent uterine maturation
Sylvia C. Hewitt, Artiom Gruzdev, Cynthia J. Willson, San-Pin Wu, John P. Lydon, Niels Galjart, Francesco J. DeMayo
FASEB J. Author manuscript; available in PMC 2024 Aug 1.
Published in final edited form as: FASEB J. 2023 Aug; 37(8): e23103. doi: 10.1096/fj.202300862R
PMCID:
PMC10372848
AbstractArticlePDF–2.2M
10.
Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos
Hocine Rekaik, Lucille Lopez-Delisle, Aurélie Hintermann, Bénédicte Mascrez, Célia Bochaton, Alexandre Mayran, Denis Duboule
Nat Genet. 2023; 55(7): 1164–1175. Published online 2023 Jun 15. doi: 10.1038/s41588-023-01426-7
PMCID:
PMC10335938
AbstractArticlePDF–18M
11.
Spermiogenesis alterations in the absence of CTCF revealed by single cell RNA sequencing
Ulises Torres-Flores, Fernanda Díaz-Espinosa, Tayde López-Santaella, Rosa Rebollar-Vega, Aarón Vázquez-Jiménez, Ian J. Taylor, Rosario Ortiz-Hernández, Olga M. Echeverría, Gerardo H. Vázquez-Nin, María Concepción Gutierrez-Ruiz, Inti Alberto De la Rosa-Velázquez, Osbaldo Resendis-Antonio, Abrahan Hernández-Hernandez
Front Cell Dev Biol. 2023; 11: 1119514. Published online 2023 Mar 30. doi: 10.3389/fcell.2023.1119514
PMCID:
PMC10097911
AbstractArticlePDF–5.4M
12.
Low-affinity CTCF binding drives transcriptional regulation whereas high-affinity binding encompasses architectural functions
Ester Marina-Zárate, Ana Rodríguez-Ronchel, Manuel J. Gómez, Fátima Sánchez-Cabo, Almudena R. Ramiro
iScience. 2023 Mar 17; 26(3): 106106. Published online 2023 Feb 2. doi: 10.1016/j.isci.2023.106106
PMCID:
PMC9958374
AbstractArticlePDF–3.1M
13.
Recruitment of CTCF to an Fto enhancer is responsible for transgenerational inheritance of BPA-induced obesity
Yoon Hee Jung, Hsiao-Lin V. Wang, Daniel Ruiz, Brianna J. Bixler, Hannah Linsenbaum, Jian-Feng Xiang, Samantha Forestier, Andrew M. Shafik, Peng Jin, Victor G. Corces
Proc Natl Acad Sci U S A. 2022 Dec 13; 119(50): e2214988119. Published online 2022 Dec 5. doi: 10.1073/pnas.2214988119
PMCID:
PMC9897486
AbstractArticlePDF–5.5M
14.
Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1
Tsung-Han S. Hsieh, Claudia Cattoglio, Elena Slobodyanyuk, Anders S. Hansen, Xavier Darzacq, Robert Tjian
Nat Genet. 2022; 54(12): 1919–1932. Published online 2022 Dec 5. doi: 10.1038/s41588-022-01223-8
PMCID:
PMC9729117
AbstractArticlePDF–24M
15.
CTCF loss induces giant lamellar bodies in Purkinje cell dendrites
Teruyoshi Hirayama, Yuuki Kadooka, Etsuko Tarusawa, Sei Saitoh, Hisako Nakayama, Natsumi Hoshino, Soichiro Nakama, Takahiro Fukuishi, Yudai Kawanishi, Hiroki Umeshima, Koichi Tomita, Yumiko Yoshimura, Niels Galjart, Kouichi Hashimoto, Nobuhiko Ohno, Takeshi Yagi
Acta Neuropathol Commun. 2022; 10: 172. Published online 2022 Nov 29. doi: 10.1186/s40478-022-01478-6
PMCID:
PMC9706876
AbstractArticlePDF–10M
16.
ALS-linked loss of Cyclin-F function affects HSP90
Alexander Siebert, Vanessa Gattringer, Jochen H Weishaupt, Christian Behrends
Life Sci Alliance. 2022 Dec; 5(12): e202101359. Published online 2022 Sep 16. doi: 10.26508/lsa.202101359
PMCID:
PMC9481933
AbstractArticlePDF–3.5M
17.
CTCF and cohesin promote focal detachment of DNA from the nuclear lamina
Tom van Schaik, Ning Qing Liu, Stefano G. Manzo, Daan Peric-Hupkes, Elzo de Wit, Bas van Steensel
Genome Biol. 2022; 23: 185. Published online 2022 Sep 1. doi: 10.1186/s13059-022-02754-3
PMCID:
PMC9438259
AbstractArticlePDF–3.0M
18.
Alcohol induced increases in sperm Histone H3 lysine 4 trimethylation correlate with increased placental CTCF occupancy and altered developmental programming
Yudhishtar S. Bedi, Haiqing Wang, Kara N. Thomas, Alison Basel, Julien Prunier, Claude Robert, Michael C. Golding
Sci Rep. 2022; 12: 8839. Published online 2022 May 25. doi: 10.1038/s41598-022-12188-3
PMCID:
PMC9130987
AbstractArticlePDF–2.7M
19.
CTCF in parvalbumin-expressing neurons regulates motor, anxiety and social behavior and neuronal identity
Liron Davis, Prudhvi Raj Rayi, Dmitriy Getselter, Hanoch Kaphzan, Evan Elliott
Mol Brain. 2022; 15: 30. Published online 2022 Apr 4. doi: 10.1186/s13041-022-00916-9
PMCID:
PMC8981645
AbstractArticlePDF–3.4M
20.
CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters
Havva Ortabozkoyun, Pin-Yao Huang, Hyunwoo Cho, Varun Narendra, Gary LeRoy, Edgar Gonzalez-Buendia, Jane A. Skok, Aristotelis Tsirigos, Esteban O. Mazzoni, Danny Reinberg
Nat Genet. 2022; 54(2): 202–212. Published online 2022 Feb 10. doi: 10.1038/s41588-021-01008-5
PMCID:
PMC8837555
AbstractArticlePDF–26M

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