PMC Links for GEO Profiles (Select 645395) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86938604.

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

Anne Schreiber, Ben C. Collins, Colin Davis, Radoslav I. Enchev, Angie Sedra, Rocco D’Antuono, Ruedi Aebersold, Matthias Peter

Mol Cell. 2021 Dec 16; 81(24): 5066–5081.e10. doi: 10.1016/j.molcel.2021.10.024

PMCID:: PMC8693860

Abstract Article

Select item 86649005.

Spatial control of avidity regulates initiation and progression of selective autophagy

David M. Hollenstein, Mariya Licheva, Nicole Konradi, David Schweida, Hector Mancilla, Muriel Mari, Fulvio Reggiori, Claudine Kraft

Nat Commun. 2021; 12: 7194. Published online 2021 Dec 10. doi: 10.1038/s41467-021-27420-3

PMCID:: PMC8664900

Abstract Article PDF–3.6M

Select item 84275136.

Combinatorial phosphorylation modulates the structure and function of the G protein γ subunit in yeast

Zahra Nassiri Toosi, Xinya Su, Ruth Austin, Shilpa Choudhury, Wei Li, Yui Tik Pang, James C. Gumbart, Matthew P. Torres

Sci Signal. Author manuscript; available in PMC 2021 Dec 22.

Published in final edited form as: Sci Signal. 2021 Jun 22; 14(688): eabd2464. Published online 2021 Jun 22. doi: 10.1126/scisignal.abd2464

PMCID:: PMC8427513

Abstract Article PDF–2.9M

Select item 81206947.

Elevating PI3P drives select downstream membrane trafficking pathways

Noah Steinfeld, Vikramjit Lahiri, Anna Morrison, Shree Padma Metur, Daniel J. Klionsky, Lois S. Weisman

Mol Biol Cell. 2021 Jan 15; 32(2): 143–156. doi: 10.1091/mbc.E20-03-0191

PMCID:: PMC8120694

Abstract Article PDF–3.3M

Select item 75490298.

Potassium starvation induces autophagy in yeast

Nambirajan Rangarajan, Ishani Kapoor, Shuang Li, Peter Drossopoulos, Kristen K. White, Victoria J. Madden, Henrik G. Dohlman

J Biol Chem. 2020 Oct 9; 295(41): 14189–14202. Published online 2020 Aug 11. doi: 10.1074/jbc.RA120.014687

PMCID:: PMC7549029

Abstract Article PDF–3.2M

Select item 69962769.

Cdc48/VCP and Endocytosis Regulate TDP-43 and FUS Toxicity and Turnover

Guangbo Liu, Aaron Byrd, Amanda N. Warner, Fen Pei, Eman Basha, Allison Buchanan, J. Ross Buchan

Mol Cell Biol. 2020 Feb; 40(4): e00256-19. Prepublished online 2019 Nov 15. Published online 2020 Jan 30. doi: 10.1128/MCB.00256-19

PMCID:: PMC6996276

Abstract Article PDF–3.1M

Select item 689275310.

Extension of Cellular Lifespan by Methionine Restriction Involves Alterations in Central Carbon Metabolism and Is Mitophagy-Dependent

Jason D. Plummer, Jay E. Johnson

Front Cell Dev Biol. 2019; 7: 301. Published online 2019 Nov 28. doi: 10.3389/fcell.2019.00301

PMCID:: PMC6892753

Abstract Article PDF–2.7M

Select item 634717011.

Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation

Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch

PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180

PMCID:: PMC6347170

Abstract Article PDF–16M

Select item 576535912.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188513.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 557319514.

Vps34 kinase domain dynamics regulate the autophagic PI 3-kinase complex

Goran Stjepanovic, Sulochanadevi Baskaran, Mary G. Lin, James H. Hurley

Mol Cell. Author manuscript; available in PMC 2018 Aug 3.

Published in final edited form as: Mol Cell. 2017 Aug 3; 67(3): 528–534.e3. Published online 2017 Jul 27. doi: 10.1016/j.molcel.2017.07.003

PMCID:: PMC5573195

Abstract Article PDF–1.0M

Select item 551589015.

Chemical inhibitors of Candida albicans hyphal morphogenesis target endocytosis

Hagit Bar-Yosef, Nora Vivanco Gonzalez, Shay Ben-Aroya, Stephen J. Kron, Daniel Kornitzer

Sci Rep. 2017; 7: 5692. Published online 2017 Jul 18. doi: 10.1038/s41598-017-05741-y

PMCID:: PMC5515890

Abstract Article PDF–2.1M

Select item 549217416.

An In Vitro TORC1 Kinase Assay That Recapitulates the Gtr-Independent Glutamine-Responsive TORC1 Activation Mechanism on Yeast Vacuoles

Mirai Tanigawa, Tatsuya Maeda

Mol Cell Biol. 2017 Jul 15; 37(14): e00075-17. Prepublished online 2017 May 8. Published online 2017 Jun 29. doi: 10.1128/MCB.00075-17

PMCID:: PMC5492174

Abstract Article PDF–1.3M

Select item 543404217.

A genetic screen in combination with biochemical analysis in Saccharomyces cerevisiae indicates that phenazine-1-carboxylic acid is harmful to vesicular trafficking and autophagy

Xiaolong Zhu, Yan Zeng, Xiu Zhao, Shenshen Zou, Ya-Wen He, Yongheng Liang

Sci Rep. 2017; 7: 1967. Published online 2017 May 16. doi: 10.1038/s41598-017-01452-6

PMCID:: PMC5434042

Abstract Article PDF–4.2M

Select item 537345418.

APOL1–Mediated Cell Injury Involves Disruption of Conserved Trafficking Processes

Etty Kruzel-Davila, Revital Shemer, Ayala Ofir, Ira Bavli-Kertselli, Ilona Darlyuk-Saadon, Pazit Oren-Giladi, Walter G. Wasser, Daniella Magen, Eid Zaknoun, Maya Schuldiner, Adi Salzberg, Daniel Kornitzer, Zvonimir Marelja, Matias Simons, Karl Skorecki

J Am Soc Nephrol. 2017 Apr; 28(4): 1117–1130. Published online 2016 Nov 18. doi: 10.1681/ASN.2016050546

PMCID:: PMC5373454

Abstract Article

Select item 520924519.

A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker

Mol Cell. Author manuscript; available in PMC 2017 Aug 4.

Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022

PMCID:: PMC5209245

Abstract Article PDF–1.6M

Select item 520434820.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

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