PMC Links for GEO Profiles (Select 646515) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89346514.

Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site

Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook

Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615

PMCID:: PMC8934651

Abstract Article PDF–4.4M

Select item 86938605.

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

Anne Schreiber, Ben C. Collins, Colin Davis, Radoslav I. Enchev, Angie Sedra, Rocco D’Antuono, Ruedi Aebersold, Matthias Peter

Mol Cell. 2021 Dec 16; 81(24): 5066–5081.e10. doi: 10.1016/j.molcel.2021.10.024

PMCID:: PMC8693860

Abstract Article

Select item 79247336.

Membrane binding and homodimerization of Atg16 via two distinct protein regions is essential for autophagy in yeast

Hana Popelka, Erin F. Reinhart, Shree Padma Metur, Kelsie A. Leary, Michael J. Ragusa, Daniel J. Klionsky

J Mol Biol. Author manuscript; available in PMC 2022 Mar 5.

Published in final edited form as: J Mol Biol. 2021 Mar 5; 433(5): 166809. Published online 2021 Jan 21. doi: 10.1016/j.jmb.2021.166809

PMCID:: PMC7924733

Abstract Article PDF–3.2M

Select item 77578767.

The yeast mitophagy receptor Atg32 is ubiquitinated and degraded by the proteasome

Nadine Camougrand, Pierre Vigié, Cécile Gonzalez, Stéphen Manon, Ingrid Bhatia-Kiššová

PLoS One. 2020; 15(12): e0241576. Published online 2020 Dec 23. doi: 10.1371/journal.pone.0241576

PMCID:: PMC7757876

Abstract Article PDF–3.1M

Select item 77440508.

Characterization of constitutive ER-phagy of excess membrane proteins

Zhanna Lipatova, Valeriya Gyurkovska, Sarah F. Zhao, Nava Segev

PLoS Genet. 2020 Dec; 16(12): e1009255. Published online 2020 Dec 4. doi: 10.1371/journal.pgen.1009255

PMCID:: PMC7744050

Abstract Article PDF–4.0M

Select item 77214759.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030

PMCID:: PMC7721475

Abstract Article

Select item 771875110.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 761077811.

Reconstitution of autophagosome nucleation defines Atg9 vesicles as seeds for membrane formation

Justyna Sawa-Makarska, Verena Baumann, Nicolas Coudevylle, Sören von Bülow, Veronika Nogellova, Christine Abert, Martina Schuschnig, Martin Graef, Gerhard Hummer, Sascha Martens

Science. Author manuscript; available in PMC 2021 May 13.

Published in final edited form as: Science. 2020 Sep 4; 369(6508): eaaz7714. Published online 2020 Sep 4. doi: 10.1126/science.aaz7714

PMCID:: PMC7610778

Abstract Article PDF–1.9M

Select item 754902912.

Potassium starvation induces autophagy in yeast

Nambirajan Rangarajan, Ishani Kapoor, Shuang Li, Peter Drossopoulos, Kristen K. White, Victoria J. Madden, Henrik G. Dohlman

J Biol Chem. 2020 Oct 9; 295(41): 14189–14202. Published online 2020 Aug 11. doi: 10.1074/jbc.RA120.014687

PMCID:: PMC7549029

Abstract Article PDF–3.2M

Select item 713822213.

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue

Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622

PMCID:: PMC7138222

Abstract Article PDF–8.0M

Select item 689275314.

Extension of Cellular Lifespan by Methionine Restriction Involves Alterations in Central Carbon Metabolism and Is Mitophagy-Dependent

Jason D. Plummer, Jay E. Johnson

Front Cell Dev Biol. 2019; 7: 301. Published online 2019 Nov 28. doi: 10.3389/fcell.2019.00301

PMCID:: PMC6892753

Abstract Article PDF–2.7M

Select item 668905015.

A switch element in the autophagy E2 Atg3 mediates allosteric regulation across the lipidation cascade

Yumei Zheng, Yu Qiu, Christy R. R. Grace, Xu Liu, Daniel J. Klionsky, Brenda A. Schulman

Nat Commun. 2019; 10: 3600. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11435-y

PMCID:: PMC6689050

Abstract Article PDF–3.9M

Select item 646250216.

Analysis of autophagy activated during changes in carbon source availability in yeast cells

Ryo Iwama, Yoshinori Ohsumi

J Biol Chem. 2019 Apr 5; 294(14): 5590–5603. Published online 2019 Feb 12. doi: 10.1074/jbc.RA118.005698

PMCID:: PMC6462502

Abstract Article PDF–4.4M

Select item 640524317.

Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure

Kumi Harada, Tetsuya Kotani, Hiromi Kirisako, Machiko Sakoh-Nakatogawa, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Hayashi Yamamoto, Yoshinori Ohsumi, Hitoshi Nakatogawa

eLife. 2019; 8: e43088. Published online 2019 Feb 27. doi: 10.7554/eLife.43088

PMCID:: PMC6405243

Abstract Article PDF–2.8M

Select item 621571318.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 611694919.

A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A

Sultan Ciftci-Yilmaz, Wei-Chun Au, Prashant K. Mishra, Jessica R. Eisenstatt, Joy Chang, Anthony R. Dawson, Iris Zhu, Mahfuzur Rahman, Sven Bilke, Michael Costanzo, Anastasia Baryshnikova, Chad L. Myers, Paul S. Meltzer, David Landsman, Richard E. Baker, Charles Boone, Munira A. Basrai

Genetics. 2018 Sep; 210(1): 203–218. Published online 2018 Jul 16. doi: 10.1534/genetics.118.301305

PMCID:: PMC6116949

Abstract Article PDF–2.1M

Select item 607000220.

The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy

Elizabeth Delorme-Axford, Emma Abernathy, Nicholas J. Lennemann, Amélie Bernard, Aileen Ariosa, Carolyn B. Coyne, Karla Kirkegaard, Daniel J. Klionsky

Autophagy. 2018; 14(5): 898–912. Published online 2018 Mar 21. doi: 10.1080/15548627.2018.1441648

PMCID:: PMC6070002

Abstract Article PDF–1.2M

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