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Items: 1 to 20 of 44

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Identifying Interaction Partners of Yeast Protein Disulfide Isomerases Using a Small Thiol-Reactive Cross-Linker: Implications for Secretory Pathway Proteostasis
Benjamin J. Freije, Wilson M. Freije, To Uyen Do, Grace E. Adkins, Alexander Bruch, Jennifer E. Hurtig, Kevin A. Morano, Raffael Schaffrath, James D. West
Chem Res Toxicol. Author manuscript; available in PMC 2023 Feb 21.
Published in final edited form as: Chem Res Toxicol. 2022 Feb 21; 35(2): 326–336. Published online 2022 Jan 27. doi: 10.1021/acs.chemrestox.1c00376
PMCID:
PMC8860869
AbstractArticlePDF–1.2M
6.
Aeration mitigates endoplasmic reticulum stress in Saccharomyces cerevisiae even without mitochondrial respiration
Huong Thi Phuong, Yuki Ishiwata-Kimata, Yuki Nishi, Norie Oguchi, Hiroshi Takagi, Yukio Kimata
Microb Cell. 2021 Apr 5; 8(4): 77–86. Published online 2021 Mar 31. doi: 10.15698/mic2021.04.746
PMCID:
PMC8010904
AbstractArticlePDF–1.1M
7.
AP‐3 vesicle uncoating occurs after HOPS‐dependent vacuole tethering
Jannis Schoppe, Muriel Mari, Erdal Yavavli, Kathrin Auffarth, Margarita Cabrera, Stefan Walter, Florian Fröhlich, Christian Ungermann
EMBO J. 2020 Oct 15; 39(20): e105117. Published online 2020 Aug 25. doi: 10.15252/embj.2020105117
PMCID:
PMC7560216
AbstractArticlePDF–3.6M
8.
Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs
Jon M. Laurent, Riddhiman K. Garge, Ashley I. Teufel, Claus O. Wilke, Aashiq H. Kachroo, Edward M. Marcotte
PLoS Biol. 2020 May; 18(5): e3000627. Published online 2020 May 18. doi: 10.1371/journal.pbio.3000627
PMCID:
PMC7259792
AbstractArticlePDF–2.8M
9.
Quantitative Analyses of the Yeast Oxidative Protein Folding Pathway In Vitro and In Vivo
Dave M. Beal, Emma L. Bastow, Gemma L. Staniforth, Tobias von der Haar, Robert B. Freedman, Mick F. Tuite
Antioxid Redox Signal. 2019 Aug 1; 31(4): 261–274. Published online 2019 Jun 24. doi: 10.1089/ars.2018.7615
PMCID:
PMC6602113
AbstractArticlePDF–4.5M
10.
Saccharomyces cerevisiae Gle2/Rae1 is involved in septin organization, essential for cell cycle progression
Gesa Zander, Wilfried Kramer, Anika Seel, Heike Krebber
Yeast. 2017 Nov; 34(11): 459–470. Published online 2017 Sep 28. doi: 10.1002/yea.3249
PMCID:
PMC6472880
AbstractArticlePDF–1.9M
11.
Molecular basis of maintaining an oxidizing environment under anaerobiosis by soluble fumarate reductase
Sunghwan Kim, Chang Min Kim, Young-Jin Son, Jae Young Choi, Rahel K. Siegenthaler, Younho Lee, Tae-Ho Jang, Jaeyoung Song, Hara Kang, Chris A. Kaiser, Hyun Ho Park
Nat Commun. 2018; 9: 4867. Published online 2018 Nov 19. doi: 10.1038/s41467-018-07285-9
PMCID:
PMC6242907
AbstractArticlePDF–3.0M
12.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
13.
Membrane fluidification by ethanol stress activates unfolded protein response in yeasts
Elisabet Navarro‐Tapia, Amparo Querol, Roberto Pérez‐Torrado
Microb Biotechnol. 2018 May; 11(3): 465–475. Published online 2018 Feb 22. doi: 10.1111/1751-7915.13032
PMCID:
PMC5902320
AbstractArticlePDF–1.0M
14.
Investigating the consequences of asymmetric endoplasmic reticulum inheritance in Saccharomyces cerevisiae under stress using a combination of single cell measurements and mathematical modelling
Felix R.H. Jonas, Kate E. Royle, Rochelle Aw, Guy-Bart V. Stan, Karen M. Polizzi
Synth Syst Biotechnol. 2018 Mar; 3(1): 64–75. Published online 2018 Jan 17. doi: 10.1016/j.synbio.2018.01.001
PMCID:
PMC5884231
AbstractArticlePDF–2.2M
15.
Endoplasmic reticulum transport of glutathione by Sec61 is regulated by Ero1 and Bip
Alise Ponsero, Aeid Igbaria, Maxwell A. Darch, Samia Miled, Caryn E. Outten, Jakob R. Winther, Gael Palais, Benoit D’autreaux, Agnes Delaunay-Moisan, Michel B. Toledano
Mol Cell. Author manuscript; available in PMC 2018 Sep 21.
Published in final edited form as: Mol Cell. 2017 Sep 21; 67(6): 962–973.e5. Published online 2017 Sep 14. doi: 10.1016/j.molcel.2017.08.012
PMCID:
PMC5772773
AbstractArticlePDF–1.6M
16.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
17.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
18.
The SND proteins constitute an alternative targeting route to the endoplasmic reticulum
Naama Aviram, Tslil Ast, Elizabeth A. Costa, Eric C. Arakel, Silvia G. Chuartzman, Calvin H. Jan, Sarah Haßdenteufel, Johanna Dudek, Martin Jung, Stefan Schorr, Richard Zimmermann, Blanche Schwappach, Jonathan S. Weissman, Maya Schuldiner
Nature. Author manuscript; available in PMC 2017 Jul 17.
Published in final edited form as: Nature. 2016 Nov 30; 540(7631): 134–138. doi: 10.1038/nature20169
PMCID:
PMC5513701
AbstractArticlePDF–1.2M
19.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
20.
Novel Roles of the Non-catalytic Elements of Yeast Protein-disulfide Isomerase in Its Interplay with Endoplasmic Reticulum Oxidoreductin 1
Yingbo Niu, Lihui Zhang, Jiaojiao Yu, Chih-chen Wang, Lei Wang
J Biol Chem. 2016 Apr 8; 291(15): 8283–8294. Published online 2016 Feb 4. doi: 10.1074/jbc.M115.694257
PMCID:
PMC4825027
AbstractArticlePDF–2.4M

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