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Items: 1 to 20 of 30

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
Structural basis of V-ATPase VO region assembly by Vma12p, 21p, and 22p
Hanlin Wang, Stephanie A. Bueler, John L. Rubinstein
Proc Natl Acad Sci U S A. 2023 Feb 7; 120(6): e2217181120. Published online 2023 Feb 1. doi: 10.1073/pnas.2217181120
PMCID:
PMC9963935
AbstractArticlePDF–4.4M
4.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Upregulation of dNTP Levels After Telomerase Inactivation Influences Telomerase-Independent Telomere Maintenance Pathway Choice in Saccharomyces cerevisiae
Paula M. van Mourik, Jannie de Jong, Sushma Sharma, Alan Kavšek, Andrei Chabes, Michael Chang
G3 (Bethesda) 2018 Aug; 8(8): 2551–2558. Published online 2018 May 30. doi: 10.1534/g3.118.200280
PMCID:
PMC6071591
AbstractArticlePDF–1.1M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
10.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
11.
Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated
Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann
Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15
PMCID:
PMC4664882
AbstractArticlePDF–2.3M
12.
RSC Chromatin-Remodeling Complex Is Important for Mitochondrial Function in Saccharomyces cerevisiae
Yuko Imamura, Feifei Yu, Misaki Nakamura, Yuhki Chihara, Kyo Okane, Masahiro Sato, Muneyoshi Kanai, Ryoko Hamada, Masaru Ueno, Masashi Yukawa, Eiko Tsuchiya
PLoS One. 2015; 10(6): e0130397. Published online 2015 Jun 18. doi: 10.1371/journal.pone.0130397
PMCID:
PMC4472808
AbstractArticlePDF–1.0M
13.
A Role for the Budding Yeast Separase, Esp1, in Ty1 Element Retrotransposition
Krystina L. Ho, Lina Ma, Stephanie Cheung, Savrina Manhas, Nancy Fang, Kaiqian Wang, Barry Young, Christopher Loewen, Thibault Mayor, Vivien Measday
PLoS Genet. 2015 Mar; 11(3): e1005109. Published online 2015 Mar 30. doi: 10.1371/journal.pgen.1005109
PMCID:
PMC4378997
AbstractArticlePDF–6.1M
14.
Cdc1 removes the ethanolamine phosphate of the first mannose of GPI anchors and thereby facilitates the integration of GPI proteins into the yeast cell wall
Hector M. Vazquez, Christine Vionnet, Carole Roubaty, Andreas Conzelmann
Mol Biol Cell. 2014 Nov 1; 25(21): 3375–3388. doi: 10.1091/mbc.E14-06-1033
PMCID:
PMC4214784
AbstractArticlePDF–5.3M
15.
Alteration of Plasma Membrane Organization by an Anticancer Lysophosphatidylcholine Analogue Induces Intracellular Acidification and Internalization of Plasma Membrane Transporters in Yeast
Ola Czyz, Teshager Bitew, Alvaro Cuesta-Marbán, Christopher R. McMaster, Faustino Mollinedo, Vanina Zaremberg
J Biol Chem. 2013 Mar 22; 288(12): 8419–8432. Published online 2013 Jan 23. doi: 10.1074/jbc.M112.425744
PMCID:
PMC3605658
AbstractArticlePDF–2.5M
16.
Lysosomal disruption preferentially targets acute myeloid leukemia cells and progenitors
Mahadeo A. Sukhai, Swayam Prabha, Rose Hurren, Angela C. Rutledge, Anna Y. Lee, Shrivani Sriskanthadevan, Hong Sun, Xiaoming Wang, Marko Skrtic, Ayesh Seneviratne, Maria Cusimano, Bozhena Jhas, Marcela Gronda, Neil MacLean, Eunice E. Cho, Paul A. Spagnuolo, Sumaiya Sharmeen, Marinella Gebbia, Malene Urbanus, Kolja Eppert, Dilan Dissanayake, Alexia Jonet, Alexandra Dassonville-Klimpt, Xiaoming Li, Alessandro Datti, Pamela S. Ohashi, Jeff Wrana, Ian Rogers, Pascal Sonnet, William Y. Ellis, Seth J. Corey, Connie Eaves, Mark D. Minden, Jean C.Y. Wang, John E. Dick, Corey Nislow, Guri Giaever, Aaron D. Schimmer
J Clin Invest. 2013 Jan 2; 123(1): 315–328. Published online 2012 Dec 3. doi: 10.1172/JCI64180
PMCID:
PMC3533286
AbstractArticlePDF–2.1M
17.
The Saccharomyces cerevisiae Nrd1-Nab3 Transcription Termination Pathway Acts in Opposition to Ras Signaling and Mediates Response to Nutrient Depletion
Miranda M. Darby, Leo Serebreni, Xuewen Pan, Jef D. Boeke, Jeffry L. Corden
Mol Cell Biol. 2012 May; 32(10): 1762–1775. doi: 10.1128/MCB.00050-12
PMCID:
PMC3347421
AbstractArticlePDF–1.5M
18.
La-motif–dependent mRNA association with Slf1 promotes copper detoxification in yeast
Luca Schenk, Dominik M. Meinel, Katja Strässer, André P. Gerber
RNA. 2012 Mar; 18(3): 449–461. doi: 10.1261/rna.028506.111
PMCID:
PMC3285933
AbstractArticlePDF–812K
19.
A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria
Suzanne Hoppins, Sean R. Collins, Ann Cassidy-Stone, Eric Hummel, Rachel M. DeVay, Laura L. Lackner, Benedikt Westermann, Maya Schuldiner, Jonathan S. Weissman, Jodi Nunnari
J Cell Biol. 2011 Oct 17; 195(2): 323–340. doi: 10.1083/jcb.201107053
PMCID:
PMC3198156
AbstractArticlePDF–4.1M
20.
Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins
Tanja Scherrer, Christian Femmer, Ralph Schiess, Ruedi Aebersold, André P Gerber
Genome Biol. 2011; 12(1): R3. Published online 2011 Jan 13. doi: 10.1186/gb-2011-12-1-r3
PMCID:
PMC3091301
AbstractArticlePDF–1.3M

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