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Items: 1 to 20 of 89

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
4.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Saccharomyces cerevisiae Ecm2 modulates the catalytic steps of pre-mRNA splicing
Clarisse van der Feltz, Brandon Nikolai, Charles Schneider, Joshua C. Paulson, Xingyang Fu, Aaron A. Hoskins
RNA. 2021 May; 27(5): 591–603. doi: 10.1261/rna.077727.120
PMCID:
PMC8051269
AbstractArticlePDF–6.5M
7.
The protein architecture of the endocytic coat analyzed by FRET microscopy
Michal Skruzny, Emma Pohl, Sandina Gnoth, Gabriele Malengo, Victor Sourjik
Mol Syst Biol. 2020 May; 16(5): e9009. Published online 2020 May 13. doi: 10.15252/msb.20199009
PMCID:
PMC7218409
AbstractArticlePDF–1.1M
8.
Spt5 modulates cotranscriptional spliceosome assembly in Saccharomyces cerevisiae
Isabella E. Maudlin, Jean D. Beggs
RNA. 2019 Oct; 25(10): 1298–1310. doi: 10.1261/rna.070425.119
PMCID:
PMC6800482
AbstractArticlePDF–1.1M
9.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
10.
Functional analysis of Hsh155/SF3b1 interactions with the U2 snRNA/branch site duplex
Tucker J. Carrocci, Joshua C. Paulson, Aaron A. Hoskins
RNA. 2018 Aug; 24(8): 1028–1040. doi: 10.1261/rna.065664.118
PMCID:
PMC6049509
AbstractArticlePDF–5.9M
11.
Structure of the yeast spliceosomal post-catalytic P complex
Shiheng Liu, Xueni Li, Lingdi Zhang, Jiansen Jiang, Ryan C. Hill, Yanxiang Cui, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Science. Author manuscript; available in PMC 2018 Feb 27.
Published in final edited form as: Science. 2017 Dec 8; 358(6368): 1278–1283. Published online 2017 Nov 16. doi: 10.1126/science.aar3462
PMCID:
PMC5828012
AbstractArticlePDF–976K
12.
Post-catalytic spliceosome structure reveals mechanism of 3'-splice site selection
Max E. Wilkinson, Sebastian M. Fica, Wojciech P. Galej, Christine M. Norman, Andrew J. Newman, Kiyoshi Nagai
Science. Author manuscript; available in PMC 2018 Jun 8.
Published in final edited form as: Science. 2017 Dec 8; 358(6368): 1283–1288. Published online 2017 Nov 16. doi: 10.1126/science.aar3729
PMCID:
PMC5808836
AbstractArticlePDF–2.0M
13.
The RES complex is required for efficient transformation of the precatalytic B spliceosome into an activated Bact complex
Penghui Bao, Cindy L. Will, Henning Urlaub, Kum-Loong Boon, Reinhard Lührmann
Genes Dev. 2017 Dec 1; 31(23-24): 2416–2429. doi: 10.1101/gad.308163.117
PMCID:
PMC5795787
AbstractArticlePDF–7.6M
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
Yeast Prp2 liberates the 5′ splice site and the branch site adenosine for catalysis of pre-mRNA splicing
Penghui Bao, Claudia Höbartner, Klaus Hartmuth, Reinhard Lührmann
RNA. 2017 Dec; 23(12): 1770–1779. doi: 10.1261/rna.063115.117
PMCID:
PMC5688998
AbstractArticlePDF–5.4M
16.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
17.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
18.
Structure of a spliceosome remodelled for exon ligation
Sebastian M. Fica, Chris Oubridge, Wojciech P. Galej, Max E. Wilkinson, Xiao-Chen Bai, Andrew J. Newman, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2017 Jul 11.
Published in final edited form as: Nature. 2017 Feb 16; 542(7641): 377–380. Published online 2017 Jan 11. doi: 10.1038/nature21078
PMCID:
PMC5321579
AbstractArticlePDF–5.6M
19.
A protein map of the yeast activated spliceosome as obtained by electron microscopy
Chengfu Sun, Norbert Rigo, Patrizia Fabrizio, Berthold Kastner, Reinhard Lührmann
RNA. 2016 Sep; 22(9): 1427–1440. doi: 10.1261/rna.057778.116
PMCID:
PMC4986897
AbstractArticlePDF–1.3M
20.
The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA
Guowei Wu, Mohamed K. Radwan, Mu Xiao, Hironori Adachi, Jason Fan, Yi-Tao Yu
RNA. 2016 Aug; 22(8): 1146–1152. doi: 10.1261/rna.056796.116
PMCID:
PMC4931107
AbstractArticlePDF–569K

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