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Items: 1 to 20 of 70

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
ArticlePDF–1.7M
2.
The Activity of YCA1 Metacaspase Is Regulated by Reactive Sulfane Sulfur via Persulfidation in Saccharomyces cerevisiae
Qingda Wang, Xiaokun Zhang, Zhuang Du, Honglei Liu, Yongzhen Xia, Luying Xun, Huaiwei Liu
Antioxidants (Basel) 2024 May; 13(5): 589. Published online 2024 May 10. doi: 10.3390/antiox13050589
PMCID:
PMC11118234
ArticlePDF–2.7M
3.
The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis
Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger
Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7
PMCID:
PMC11024185
ArticlePDF–7.4M
4.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
ArticlePDF–1.7M
5.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
ArticlePDF–20M
6.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
ArticlePDF–5.9M
7.
Yca1 metacaspase: diverse functions determine how yeast live and let die
Darren K Lam, Gavin Sherlock
FEMS Yeast Res. 2023; 23: foad022. Published online 2023 Mar 31. doi: 10.1093/femsyr/foad022
Correction in:
FEMS Yeast Res. 2024; 24: foae019.
PMCID:
PMC10094001
ArticlePDF–1.2M
8.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
ArticlePDF–818K
9.
VID22 counteracts G-quadruplex-induced genome instability
Elena Galati, Maria C Bosio, Daniele Novarina, Matteo Chiara, Giulia M Bernini, Alessandro M Mozzarelli, Maria L García-Rubio, Belén Gómez-González, Andrés Aguilera, Thomas Carzaniga, Marco Todisco, Tommaso Bellini, Giulia M Nava, Gianmaria Frigè, Sarah Sertic, David S Horner, Anastasia Baryshnikova, Caterina Manzari, Anna M D’Erchia, Graziano Pesole, Grant W Brown, Marco Muzi-Falconi, Federico Lazzaro
Nucleic Acids Res. 2021 Dec 16; 49(22): 12785–12804. Published online 2021 Dec 6. doi: 10.1093/nar/gkab1156
PMCID:
PMC8682794
ArticlePDF–8.0M
10.
Hydroquinone exposure accumulates neutral lipid by the activation of CDP-DAG pathway in Saccharomyces cerevisiae
Abhishek Raj, Vasanthi Nachiappan
Toxicol Res (Camb) 2021 Mar; 10(2): 354–367. Published online 2021 Feb 17. doi: 10.1093/toxres/tfab005
PMCID:
PMC8045588
ArticlePDF–956K
11.
Chemical-Genetic Interactions of Bacopa monnieri Constituents in Cells Deficient for the DNA Repair Endonuclease RAD1 Appear Linked to Vacuolar Disruption
Chananya Huangteerakul, Hsu Mon Aung, Thitipa Thosapornvichai, Marisa Duangkaew, Amornrat Naranuntarat Jensen, Suchada Sukrong, Kornkanok Ingkaninan, Laran T. Jensen
Molecules. 2021 Mar; 26(5): 1207. Published online 2021 Feb 24. doi: 10.3390/molecules26051207
PMCID:
PMC7956252
ArticlePDF–4.7M
12.
Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes
Yeonji Chang, Gyubum Lim, Won-Ki Huh
J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060
PMCID:
PMC7879482
ArticlePDF–5.9M
13.
Cytological and genetic consequences for the progeny of a mitotic catastrophe provoked by Topoisomerase II deficiency
Cristina Ramos-Pérez, Margaret Dominska, Laura Anaissi-Afonso, Sara Cazorla-Rivero, Oliver Quevedo, Isabel Lorenzo-Castrillejo, Thomas D. Petes, Félix Machín
Aging (Albany NY) 2019 Dec 15; 11(23): 11686–11721. Published online 2019 Dec 8. doi: 10.18632/aging.102573
PMCID:
PMC6932922
ArticlePDF–2.5M
14.
The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system
Amit Shrestha, Steve Brunette, William Lloyd Stanford, Lynn Arthur Megeney
Cell Discov. 2019; 5: 6. Published online 2019 Jan 22. doi: 10.1038/s41421-018-0071-9
PMCID:
PMC6341073
ArticlePDF–1.7M
15.
Mitochondrial impairment and oxidative stress mediated apoptosis induced by α-Fe2O3 nanoparticles in Saccharomyces cerevisiae
Song Zhu, Fei Luo, Bin Zhu, Gao-Xue Wang
Toxicol Res (Camb) 2017 Sep 1; 6(5): 719–728. Published online 2017 Jul 18. doi: 10.1039/c7tx00123a
PMCID:
PMC6062213
ArticlePDF–3.9M
16.
Toxicological effects of graphene oxide on Saccharomyces cerevisiae
Song Zhu, Fei Luo, Bin Zhu, Gao-Xue Wang
Toxicol Res (Camb) 2017 Jul 1; 6(4): 535–543. Published online 2017 May 26. doi: 10.1039/c7tx00103g
PMCID:
PMC6060721
ArticlePDF–7.0M
17.
Ancestral State Reconstruction of the Apoptosis Machinery in the Common Ancestor of Eukaryotes
Joanna Klim, Arkadiusz Gładki, Roza Kucharczyk, Urszula Zielenkiewicz, Szymon Kaczanowski
G3 (Bethesda) 2018 Jun; 8(6): 2121–2134. Published online 2018 Apr 27. doi: 10.1534/g3.118.200295
PMCID:
PMC5982838
ArticlePDF–2.5M
18.
Multi-omic mitoprotease profiling defines a role for Oct1p in coenzyme Q production
Mike T. Veling, Andrew G. Reidenbach, Elyse C. Freiberger, Nicholas W. Kwiecien, Paul D. Hutchins, Michael J. Drahnak, Adam Jochem, Arne Ulbrich, Matthew J.P. Rush, Jason D. Russell, Joshua J. Coon, David J. Pagliarini
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 970–977.e11. doi: 10.1016/j.molcel.2017.11.023
PMCID:
PMC5730362
ArticlePDF–1.6M
19.
Endonucleolytic cleavage in the expansion segment 7 of 25S rRNA is an early marker of low-level oxidative stress in yeast
Daniel Shedlovskiy, Jessica A. Zinskie, Ethan Gardner, Dimitri G. Pestov, Natalia Shcherbik
J Biol Chem. 2017 Nov 10; 292(45): 18469–18485. Published online 2017 Sep 22. doi: 10.1074/jbc.M117.800003
PMCID:
PMC5682959
ArticlePDF–4.8M
20.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
ArticlePDF–2.6M

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