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Items: 1 to 20 of 30

1.
An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae
Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori
Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749
PMCID:
PMC11423678
AbstractArticlePDF–1.7M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Role of the Cell Asymmetry Apparatus and Ribosome-Associated Chaperones in the Destabilization of a Saccharomyces cerevisiae Prion by Heat Shock
Rebecca L. Howie, Lina Manuela Jay-Garcia, Denis A. Kiktev, Quincy L. Faber, Margaret Murphy, Katherine A. Rees, Numera Sachwani, Yury O. Chernoff
Genetics. 2019 Jul; 212(3): 757–771. Published online 2019 Jun 13. doi: 10.1534/genetics.119.302237
PMCID:
PMC6614889
AbstractArticlePDF–1.6M
7.
The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system
Amit Shrestha, Steve Brunette, William Lloyd Stanford, Lynn Arthur Megeney
Cell Discov. 2019; 5: 6. Published online 2019 Jan 22. doi: 10.1038/s41421-018-0071-9
PMCID:
PMC6341073
AbstractArticlePDF–1.7M
8.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
Prion-based memory of heat stress in yeast
Tatiana A. Chernova, Yury O. Chernoff, Keith D. Wilkinson
Prion. 2017; 11(3): 151–161. Published online 2017 May 19. doi: 10.1080/19336896.2017.1328342
PMCID:
PMC5480388
AbstractArticlePDF–476K
11.
Yeast Short-lived Actin Associated Protein Forms a Metastable Prion in Response to Thermal Stress
Tatiana A. Chernova, Denis A. Kiktev, Andrey V. Romanyuk, John R. Shanks, Oskar Laur, Moiez Ali, Abheek Ghosh, Dami Kim, Zhen Yang, Maggie Mang, Yury O. Chernoff, Keith D. Wilkinson
Cell Rep. Author manuscript; available in PMC 2017 Jan 26.
Published in final edited form as: Cell Rep. 2017 Jan 17; 18(3): 751–761. doi: 10.1016/j.celrep.2016.12.082
PMCID:
PMC5267347
AbstractArticlePDF–1.9M
12.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
13.
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
Min-Kyung Sung, Tanya R Porras-Yakushi, Justin M Reitsma, Ferdinand M Huber, Michael J Sweredoski, André Hoelz, Sonja Hess, Raymond J Deshaies
eLife. 2016; 5: e19105. Published online 2016 Aug 23. doi: 10.7554/eLife.19105
PMCID:
PMC5026473
AbstractArticlePDF–4.2M
14.
Hul5 HECT Ubiquitin Ligase Plays A Major Role in The Ubiquitylation and Turn Over of Cytosolic Misfolded Proteins
Nancy N. Fang, Alex H.M. Ng, Vivien Measday, Thibault Mayor
Nat Cell Biol. Author manuscript; available in PMC 2016 Jul 26.
Published in final edited form as: Nat Cell Biol. 2011 Oct 9; 13(11): 1344–1352. Published online 2011 Oct 9. doi: 10.1038/ncb2343
PMCID:
PMC4961474
AbstractArticlePDF–1.9M
15.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
16.
Ubiquitin‐Activated Interaction Traps (UBAITs) identify E3 ligase binding partners
Hazel F O'Connor, Nancy Lyon, Justin W Leung, Poonam Agarwal, Caleb D Swaim, Kyle M Miller, Jon M Huibregtse
EMBO Rep. 2015 Dec; 16(12): 1699–1712. Published online 2015 Oct 27. doi: 10.15252/embr.201540620
PMCID:
PMC4693525
AbstractArticlePDF–693K
17.
Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated
Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann
Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15
PMCID:
PMC4664882
AbstractArticlePDF–2.3M
18.
Stress-dependent Proteolytic Processing of the Actin Assembly Protein Lsb1 Modulates a Yeast Prion
Moiez Ali, Tatiana A. Chernova, Gary P. Newnam, Luming Yin, John Shanks, Tatiana S. Karpova, Andrew Lee, Oskar Laur, Sindhu Subramanian, Dami Kim, James G. McNally, Nicholas T. Seyfried, Yury O. Chernoff, Keith D. Wilkinson
J Biol Chem. 2014 Oct 3; 289(40): 27625–27639. Published online 2014 Aug 20. doi: 10.1074/jbc.M114.582429
PMCID:
PMC4183801
AbstractArticlePDF–2.8M
19.
A bipolar functionality of Q/N-rich proteins: Lsm4 amyloid causes clearance of yeast prions
Keita Oishi, Hiroshi Kurahashi, Chan-Gi Pack, Yasushi Sako, Yoshikazu Nakamura
Microbiologyopen. 2013 Jun; 2(3): 415–430. Published online 2013 Mar 20. doi: 10.1002/mbo3.83
PMCID:
PMC3684756
AbstractArticlePDF–2.6M
20.
Lsb1 Is a Negative Regulator of Las17 Dependent Actin Polymerization Involved in Endocytosis
Matthias Spiess, Johan-Owen de Craene, Alphée Michelot, Bruno Rinaldi, Aline Huber, David G. Drubin, Barbara Winsor, Sylvie Friant
PLoS One. 2013; 8(4): e61147. Published online 2013 Apr 8. doi: 10.1371/journal.pone.0061147
PMCID:
PMC3620054
AbstractArticlePDF–4.6M

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