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Items: 1 to 20 of 75

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20
Ifeoluwapo Matthew Joshua, Meng Lin, Ariestia Mardjuki, Alessandra Mazzola, Thomas Höfken
Int J Mol Sci. 2023 Nov; 24(21): 15916. Published online 2023 Nov 2. doi: 10.3390/ijms242115916
PMCID:
PMC10647699
AbstractArticlePDF–5.4M
3.
The SAGA HAT module is tethered by its SWIRM domain and modulates activity of the SAGA DUB module
Sara T. Haile, Sanim Rahman, James K. Fields, Benjamin C. Orsburn, Namandjé N. Bumpus, Cynthia Wolberger
Biochim Biophys Acta Gene Regul Mech. Author manuscript; available in PMC 2023 Jun 1.
Published in final edited form as: Biochim Biophys Acta Gene Regul Mech. 2023 Jun; 1866(2): 194929. Published online 2023 Mar 24. doi: 10.1016/j.bbagrm.2023.194929
PMCID:
PMC10226619
AbstractArticlePDF–1.8M
4.
Sus1 maintains a normal lifespan through regulation of TREX-2 complex-mediated mRNA export
Suji Lim, Yan Liu, Byung-Ho Rhie, Chun Kim, Hong-Yeoul Ryu, Seong Hoon Ahn
Aging (Albany NY) 2022 Jun 30; 14(12): 4990–5012. Published online 2022 Jun 29. doi: 10.18632/aging.204146
PMCID:
PMC9271307
AbstractArticlePDF–2.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
SAGA and SAGA-like SLIK transcriptional coactivators are structurally and biochemically equivalent
Klaudia Adamus, Cyril Reboul, Jarrod Voss, Cheng Huang, Ralf B. Schittenhelm, Sarah N. Le, Andrew M. Ellisdon, Hans Elmlund, Marion Boudes, Dominika Elmlund
J Biol Chem. 2021 Jan-Jun; 296: 100671. Published online 2021 Apr 15. doi: 10.1016/j.jbc.2021.100671
PMCID:
PMC8131915
AbstractArticlePDF–2.0M
7.
The deubiquitylase Ubp15 couples transcription to mRNA export
Fanny Eyboulet, Célia Jeronimo, Jacques Côté, François Robert
eLife. 2020; 9: e61264. Published online 2020 Nov 23. doi: 10.7554/eLife.61264
PMCID:
PMC7682988
AbstractArticlePDF–1.4M
8.
Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2
Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit
Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964
PMCID:
PMC7672433
AbstractArticlePDF–6.0M
9.
SAGA–CORE subunit Spt7 is required for correct Ubp8 localization, chromatin association and deubiquitinase activity
Carme Nuño-Cabanes, Varinia García-Molinero, Manuel Martín-Expósito, María-Eugenia Gas, Paula Oliete-Calvo, Encar García-Oliver, María de la Iglesia-Vayá, Susana Rodríguez-Navarro
Epigenetics Chromatin. 2020; 13: 46. Published online 2020 Oct 28. doi: 10.1186/s13072-020-00367-3
PMCID:
PMC7594455
AbstractArticlePDF–1.9M
10.
An insight into structural plasticity and conformational transitions of transcriptional co-activator Sus1
Akhilendra Pratap Bharati, Mohd Kashif, Sumit Kumar Chaturvedi, Rizwan Hasan Khan, Abrar Ahmad
PLoS One. 2020; 15(3): e0229216. Published online 2020 Mar 5. doi: 10.1371/journal.pone.0229216
PMCID:
PMC7058303
AbstractArticlePDF–2.4M
11.
Structure of transcription coactivator SAGA
Haibo Wang, Christian Dienemann, Alexandra Stützer, Henning Urlaub, Alan C.M. Cheung, Patrick Cramer
Nature. Author manuscript; available in PMC 2020 Jul 22.
Published in final edited form as: Nature. 2020 Jan; 577(7792): 717–720. Published online 2020 Jan 22. doi: 10.1038/s41586-020-1933-5
PMCID:
PMC6994259
AbstractArticlePDF–4.1M
12.
Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress‐dependent mRNAs
Manuel Martín‐Expósito, Maria‐Eugenia Gas, Nada Mohamad, Carme Nuño‐Cabanes, Ana Tejada‐Colón, Pau Pascual‐García, Lorena de la Fuente, Belén Chaves‐Arquero, Jonathan Merran, Jeffry Corden, Ana Conesa, José Manuel Pérez‐Cañadillas, Jerónimo Bravo, Susana Rodríguez‐Navarro
EMBO Rep. 2019 Dec 5; 20(12): e47964. Published online 2019 Nov 3. doi: 10.15252/embr.201947964
PMCID:
PMC6893359
AbstractArticlePDF–5.5M
13.
Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME
Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy
Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317
PMCID:
PMC6648895
AbstractArticlePDF–14M
14.
Architecture of Saccharomyces cerevisiae SAGA complex
Gaochao Liu, Xiangdong Zheng, Haipeng Guan, Yong Cao, Hongyuan Qu, Junqing Kang, Xiangle Ren, Jianlin Lei, Meng-Qiu Dong, Xueming Li, Haitao Li
Cell Discov. 2019; 5: 25. Published online 2019 May 7. doi: 10.1038/s41421-019-0094-x
PMCID:
PMC6502868
ArticlePDF–1.2M
15.
A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export
Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro
EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992
PMCID:
PMC6216277
AbstractArticlePDF–1.7M
16.
Defining essential elements and genetic interactions of the yeast Lsm2–8 ring and demonstration that essentiality of Lsm2–8 is bypassed via overexpression of U6 snRNA or the U6 snRNP subunit Prp24
Allen J. Roth, Stewart Shuman, Beate Schwer
RNA. 2018 Jun; 24(6): 853–864. doi: 10.1261/rna.066175.118
PMCID:
PMC5959253
AbstractArticlePDF–7.4M
17.
The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration
Savrina Manhas, Lina Ma, Vivien Measday
Nucleic Acids Res. 2018 Apr 20; 46(7): 3552–3578. Published online 2018 Mar 5. doi: 10.1093/nar/gky109
PMCID:
PMC5909446
AbstractArticlePDF–16M
18.
The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally
Varinia García-Molinero, José García-Martínez, Rohit Reja, Pedro Furió-Tarí, Oreto Antúnez, Vinesh Vinayachandran, Ana Conesa, B. Franklin Pugh, José E. Pérez-Ortín, Susana Rodríguez-Navarro
Epigenetics Chromatin. 2018; 11: 13. Published online 2018 Mar 29. doi: 10.1186/s13072-018-0184-2
PMCID:
PMC5875001
AbstractArticlePDF–2.0M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M

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