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Select item 111099581.

Defective transfer of parental histone decreases frequency of homologous recombination by increasing free histone pools in budding yeast

Srinivasu Karri, Yi Yang, Jiaqi Zhou, Quinn Dickinson, Jing Jia, Yuxin Huang, Zhiquan Wang, Haiyun Gan, Chuanhe Yu

Nucleic Acids Res. 2024 May 22; 52(9): 5138–5151. Published online 2024 Mar 30. doi: 10.1093/nar/gkae205

PMCID:: PMC11109958

Abstract Article PDF–1.8M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105115614.

Synergism between CMG helicase and leading strand DNA polymerase at replication fork

Zhichun Xu, Jianrong Feng, Daqi Yu, Yunjing Huo, Xiaohui Ma, Wai Hei Lam, Zheng Liu, Xiang David Li, Toyotaka Ishibashi, Shangyu Dang, Yuanliang Zhai

Nat Commun. 2023; 14: 5849. Published online 2023 Sep 20. doi: 10.1038/s41467-023-41506-0

PMCID:: PMC10511561

Abstract Article PDF–5.3M

Select item 102333685.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 96309866.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88871268.

Parental histone deposition on the replicated strands promotes error-free DNA damage tolerance and regulates drug resistance

Valeria Dolce, Sabrina Dusi, Michele Giannattasio, Chinnu Rose Joseph, Marco Fumasoni, Dana Branzei

Genes Dev. 2022 Feb 1; 36(3-4): 167–179. doi: 10.1101/gad.349207.121

PMCID:: PMC8887126

Abstract Article PDF–16M

Select item 87755919.

Systematic Screening of Penetratin’s Protein Targets by Yeast Proteome Microarrays

Pramod Shah, Chien-Sheng Chen

Int J Mol Sci. 2022 Jan; 23(2): 712. Published online 2022 Jan 10. doi: 10.3390/ijms23020712

PMCID:: PMC8775591

Abstract Article PDF–5.0M

Select item 842120410.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 834656011.

Dpb4 promotes resection of DNA double-strand breaks and checkpoint activation by acting in two different protein complexes

Erika Casari, Elisa Gobbini, Marco Gnugnoli, Marco Mangiagalli, Michela Clerici, Maria Pia Longhese

Nat Commun. 2021; 12: 4750. Published online 2021 Aug 6. doi: 10.1038/s41467-021-25090-9

PMCID:: PMC8346560

Abstract Article PDF–5.7M

Select item 761276112.

Checkpoint-mediated DNA polymerase ε exonuclease activity curbing counteracts resection-driven fork collapse

Grazia Pellicanò, Mohammed Al Mamun, Dolores Jurado-Santiago, Sara Villa-Hernández, Xingyu Yin, Michele Giannattasio, Michael C. Lanz, Marcus B. Smolka, Joseph Yeeles, Katsuhiko Shirahige, Miguel García-Díaz, Rodrigo Bermejo

Mol Cell. Author manuscript; available in PMC 2022 May 23.

Published in final edited form as: Mol Cell. 2021 Jul 1; 81(13): 2778–2792.e4. Published online 2021 Apr 30. doi: 10.1016/j.molcel.2021.04.006

PMCID:: PMC7612761

Abstract Article PDF–2.7M

Select item 730836813.

Structure of the polymerase ε holoenzyme and atomic model of the leading strand replisome

Zuanning Yuan, Roxana Georgescu, Grant D. Schauer, Michael E. O’Donnell, Huilin Li

Nat Commun. 2020; 11: 3156. Published online 2020 Jun 22. doi: 10.1038/s41467-020-16910-5

PMCID:: PMC7308368

Abstract Article PDF–3.2M

Select item 703406214.

Sen1 Is Recruited to Replication Forks via Ctf4 and Mrc1 and Promotes Genome Stability

Rowin Appanah, Emma Claire Lones, Umberto Aiello, Domenico Libri, Giacomo De Piccoli

Cell Rep. 2020 Feb 18; 30(7): 2094–2105.e9. Published online 2020 Feb 18. doi: 10.1016/j.celrep.2020.01.087

PMCID:: PMC7034062

Abstract Article

Select item 683773915.

Identification of Exo1-Msh2-interaction motifs in DNA mismatch repair and new Msh2-binding partners

Eva M. Goellner, Christopher D. Putnam, William J. Graham V, Christine M. Rahal, Bin-Zhong Li, Richard D. Kolodner

Nat Struct Mol Biol. Author manuscript; available in PMC 2019 Nov 7.

Published in final edited form as: Nat Struct Mol Biol. 2018 Aug; 25(8): 650–659. Published online 2018 Jul 30. doi: 10.1038/s41594-018-0092-y

Correction in:: Nat Struct Mol Biol. 2019 Nov 4

PMCID:: PMC6837739

Abstract Article PDF–2.3M

Select item 678955816.

The nucleosome core particle remembers its position through DNA replication and RNA transcription

Gavin Schlissel, Jasper Rine

Proc Natl Acad Sci U S A. 2019 Oct 8; 116(41): 20605–20611. Published online 2019 Sep 11. doi: 10.1073/pnas.1911943116

PMCID:: PMC6789558

Abstract Article PDF–2.4M

Select item 678188717.

Mutations in the PCNA DNA Polymerase Clamp of Saccharomyces cerevisiae Reveal Complexities of the Cell Cycle and Ploidy on Heterochromatin Assembly

Molly Brothers, Jasper Rine

Genetics. 2019 Oct; 213(2): 449–463. Published online 2019 Aug 26. doi: 10.1534/genetics.119.302452

PMCID:: PMC6781887

Abstract Article PDF–1.8M

Select item 658235118.

Structural evidence for an essential Fe–S cluster in the catalytic core domain of DNA polymerase ϵ

Josy ter Beek, Vimal Parkash, Göran O Bylund, Pia Osterman, A Elisabeth Sauer-Eriksson, Erik Johansson

Nucleic Acids Res. 2019 Jun 20; 47(11): 5712–5722. Published online 2019 Apr 10. doi: 10.1093/nar/gkz248

PMCID:: PMC6582351

Abstract Article PDF–10M

Select item 621571319.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 608512220.

Multiple inputs ensure yeast cell size homeostasis during cell cycle progression

Cecilia Garmendia-Torres, Olivier Tassy, Audrey Matifas, Nacho Molina, Gilles Charvin

eLife. 2018; 7: e34025. Published online 2018 Jul 4. doi: 10.7554/eLife.34025

PMCID:: PMC6085122

Abstract Article PDF–4.6M

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