PMC Links for GEO Profiles (Select 66730340) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Article PDF–818K

Select item 89346514.

Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site

Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook

Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615

PMCID:: PMC8934651

Article PDF–4.4M

Select item 84310265.

Docking to a Basic Helix Promotes Specific Phosphorylation by G1-Cdk1

Ilona Faustova, Kaidi Möll, Ervin Valk, Mart Loog, Mihkel Örd

Int J Mol Sci. 2021 Sep; 22(17): 9514. Published online 2021 Sep 1. doi: 10.3390/ijms22179514

PMCID:: PMC8431026

Article PDF–3.1M

Select item 77748866.

The budding yeast Start repressor Whi7 differs in regulation from Whi5, emerging as a major cell cycle brake in response to stress

Ester Méndez, Mercè Gomar-Alba, M. Carmen Bañó, Manuel Mendoza, Inma Quilis, J. Carlos Igual

J Cell Sci. 2020 Dec 15; 133(24): jcs251413. Published online 2020 Dec 21. doi: 10.1242/jcs.251413

PMCID:: PMC7774886

Article

Select item 57653597.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Article PDF–2.2M

Select item 56618858.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Article PDF–2.6M

Select item 56002549.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Article PDF–2.4M

Select item 557121910.

Whi7 is an unstable cell-cycle repressor of the Start transcriptional program

Mercè Gomar-Alba, Ester Méndez, Inma Quilis, M. Carmen Bañó, J. Carlos Igual

Nat Commun. 2017; 8: 329. Published online 2017 Aug 24. doi: 10.1038/s41467-017-00374-1

PMCID:: PMC5571219

Article PDF–2.6M

Select item 489457411.

Msa1 and Msa2 Modulate G1-Specific Transcription to Promote G1 Arrest and the Transition to Quiescence in Budding Yeast

Shawna Miles, Matthew W. Croxford, Amali P. Abeysinghe, Linda L. Breeden

PLoS Genet. 2016 Jun; 12(6): e1006088. Published online 2016 Jun 6. doi: 10.1371/journal.pgen.1006088

PMCID:: PMC4894574

Article PDF–3.6M

Select item 431875112.

A docking interface in the cyclin Cln2 promotes multisite phosphorylation of substrates and timely cell cycle entry

Samyabrata Bhaduri, Ervin Valk, Matthew J. Winters, Brian Gruessner, Mart Loog, Peter M. Pryciak

Curr Biol. Author manuscript; available in PMC 2016 Feb 2.

Published in final edited form as: Curr Biol. 2015 Feb 2; 25(3): 316–325. Published online 2015 Jan 22. doi: 10.1016/j.cub.2014.11.069

PMCID:: PMC4318751

Article PDF–2.0M

Select item 412813213.

Method for identifying phosphorylated substrates of specific cyclin/cyclin-dependent kinase complexes

Yinyin Li, Frederick R. Cross, Brian T. Chait

Proc Natl Acad Sci U S A. 2014 Aug 5; 111(31): 11323–11328. Published online 2014 Jul 21. doi: 10.1073/pnas.1409666111

PMCID:: PMC4128132

Article PDF–1.0M

Select item 400832314.

The available SRL3 deletion strain of Saccharomyces cerevisiae contains a truncation of DNA damage tolerance protein Mms2: Implications for Srl3 and Mms2 functions

Eunmi Kim, Wolfram Siede

Internet J Microbiol. Author manuscript; available in PMC 2014 May 2.

Published in final edited form as: Internet J Microbiol. 2009; 8(1): 8. Published online 2009. doi: 10.5580/42c

PMCID:: PMC4008323

Article PDF–524K

Select item 365673715.

A Genetic Screen for High Copy Number Suppressors of the Synthetic Lethality Between elg1Δ and srs2Δ in Yeast

Inbal Gazy, Batia Liefshitz, Alex Bronstein, Oren Parnas, Nir Atias, Roded Sharan, Martin Kupiec

G3 (Bethesda) 2013 May; 3(5): 917–926. Published online 2013 May 1. doi: 10.1534/g3.113.005561

PMCID:: PMC3656737

Article PDF–1.0M

Select item 362424716.

Repression of G₁/S Transcription Is Mediated via Interaction of the GTB Motifs of Nrm1 and Whi5 with Swi6

Anna Travesa, Tatyana I. Kalashnikova, Robertus A. M. de Bruin, Sarah Rose Cass, Charly Chahwan, David E. Lee, Noel F. Lowndes, Curt Wittenberg

Mol Cell Biol. 2013 Apr; 33(8): 1476–1486. doi: 10.1128/MCB.01333-12

Correction in:: Mol Cell Biol. 2017 Aug 15; 37(16): e00272-17.

PMCID:: PMC3624247

Article PDF–1.5M

Select item 339566717.

Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway

A. Belén Sanz, Raúl García, Jose Manuel Rodríguez-Peña, Sonia Díez-Muñiz, César Nombela, Craig L. Peterson, Javier Arroyo

Mol Biol Cell. 2012 Jul 15; 23(14): 2805–2817. doi: 10.1091/mbc.E12-04-0278

PMCID:: PMC3395667

Article PDF–3.1M

Select item 331716018.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs

Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews

Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111

PMCID:: PMC3317160

Article PDF–998K

Select item 319637619.

Cyclin-specific docking motifs promote phosphorylation of yeast signaling proteins by G1/S Cdk complexes

Samyabrata Bhaduri, Peter M. Pryciak

Curr Biol. Author manuscript; available in PMC 2012 Oct 11.

Published in final edited form as: Curr Biol. 2011 Oct 11; 21(19): 1615–1623. Published online 2011 Sep 22. doi: 10.1016/j.cub.2011.08.033

PMCID:: PMC3196376

Article PDF–3.0M

Select item 257886020.

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

Yuko Hasegawa, Kenji Irie, André P. Gerber

RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508

PMCID:: PMC2578860

Article PDF–1.3M

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