PMC Links for GEO Profiles (Select 6686514) - PMC

Select item 97948241.

Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages

Wei Feng, Abha Bais, Haoting He, Cassandra Rios, Shan Jiang, Juan Xu, Cindy Chang, Dennis Kostka, Guang Li

Nat Commun. 2022; 13: 7960. Published online 2022 Dec 27. doi: 10.1038/s41467-022-35691-7

PMCID:: PMC9794824

Select item 96658852.

Mapping Brain Gene Coexpression in Daytime Transcriptomes Unveils Diurnal Molecular Networks and Deciphers Perturbation Gene Signatures

Nan Wang, Peter Langfelder, Matthew Stricos, Lalini Ramanathan, Jeffrey B. Richman, Raymond Vaca, Mary Plascencia, Xiaofeng Gu, Shasha Zhang, T. Katherine Tamai, Liguo Zhang, Fuying Gao, Koliane Ouk, Xiang Lu, Leonya Ivanov, Tom Vogt, Qing Richard Lu, A. Jennifer Morton, Christopher Colwell, Jeffrey S. Aaronson, Jim Rosinski, Steve Horvath, X. William Yang

Neuron. Author manuscript; available in PMC 2023 Oct 19.

Published in final edited form as: Neuron. 2022 Oct 19; 110(20): 3318–3338.e9. doi: 10.1016/j.neuron.2022.09.028

PMCID:: PMC9665885

Abstract Article PDF–4.5M

Select item 94819753.

Understanding the development of oral epithelial organs through single cell transcriptomic analysis

Qianlin Ye, Arshia Bhojwani, Jimmy K. Hu

Development. 2022 Aug 15; 149(16): dev200539. Published online 2022 Aug 17. doi: 10.1242/dev.200539

PMCID:: PMC9481975

Abstract Article

Select item 83157384.

RP58 Represses Transcriptional Programs Linked to Nonneuronal Cell Identity and Glioblastoma Subtypes in Developing Neurons

Chaomei Xiang, Karla K. Frietze, Yingtao Bi, Yanwen Li, Valentina Dal Pozzo, Sharmistha Pal, Noah Alexander, Valerie Baubet, Victoria D’Acunto, Christopher E. Mason, Ramana V. Davuluri, Nadia Dahmane

Mol Cell Biol. 2021 Jul; 41(7): e00526-20. Prepublished online 2021 Apr 26. Published online 2021 Jun 23. doi: 10.1128/MCB.00526-20

PMCID:: PMC8315738

Abstract Article PDF–7.7M

Select item 55679105.

A SHH-FOXF1-BMP4 signaling axis regulating growth and differentiation of epithelial and mesenchymal tissues in ureter development

Tobias Bohnenpoll, Anna B. Wittern, Tamrat M. Mamo, Anna-Carina Weiss, Carsten Rudat, Marc-Jens Kleppa, Karin Schuster-Gossler, Irina Wojahn, Timo H.-W. Lüdtke, Mark-Oliver Trowe, Andreas Kispert

PLoS Genet. 2017 Aug; 13(8): e1006951. Published online 2017 Aug 10. doi: 10.1371/journal.pgen.1006951

PMCID:: PMC5567910

Abstract Article PDF–28M

Select item 55090506.

DDiT4L promotes autophagy and inhibits pathological cardiac hypertrophy in response to stress

Bridget Simonson, Vinita Subramanya, Mun Chun Chan, Aifeng Zhang, Hannabeth Franchino, Phyllis Ottaviano, Manoj K. Mishra, Ashley C. Knight, Danielle Hunt, Ionita Ghiran, Tejvir S. Khurana, Maria Kontaridis, Anthony Rosenzweig, Saumya Das

Sci Signal. Author manuscript; available in PMC 2017 Jul 13.

Published in final edited form as: Sci Signal. 2017 Feb 28; 10(468): eaaf5967. Published online 2017 Feb 28. doi: 10.1126/scisignal.aaf5967

PMCID:: PMC5509050

Abstract Article PDF–2.4M

Select item 50113587.

Six1 homeoprotein drives myofiber type IIA specialization in soleus muscle

Iori Sakakibara, Maud Wurmser, Matthieu Dos Santos, Marc Santolini, Serge Ducommun, Romain Davaze, Anthony Guernec, Kei Sakamoto, Pascal Maire

Skelet Muscle. 2016; 6(1): 30. Published online 2016 Sep 5. doi: 10.1186/s13395-016-0102-x

PMCID:: PMC5011358

Abstract Article PDF–3.5M

Select item 45728588.

REDD2-mediated inhibition of mTOR promotes dendrite retraction induced by axonal injury

B Morquette, P Morquette, J Agostinone, E Feinstein, R A McKinney, A Kolta, A Di Polo

Cell Death Differ. 2015 Apr; 22(4): 612–625. Published online 2014 Sep 26. doi: 10.1038/cdd.2014.149

PMCID:: PMC4572858

Abstract Article PDF–3.8M

Select item 43195599.

A high resolution spatiotemporal atlas of gene expression of the developing mouse brain

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones

Neuron. Author manuscript; available in PMC 2015 Jul 16.

Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033

PMCID:: PMC4319559

Abstract Article PDF–3.0M

Select item 302253410.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 266026711.

REDD2 is enriched in skeletal muscle and inhibits mTOR signaling in response to leucine and stretch

Mitsunori Miyazaki, Karyn A. Esser

Am J Physiol Cell Physiol. 2009 Mar; 296(3): C583–C592. Published online 2009 Jan 7. doi: 10.1152/ajpcell.00464.2008

PMCID:: PMC2660267

Abstract Article

Select item 265240012.

Promoting Axon Regeneration in the Adult CNS by Modulation of the PTEN/mTOR Pathway

Kevin Kyungsuk Park, Kai Liu, Yang Hu, Patrice D. Smith, Chen Wang, Bin Cai, Bengang Xu, Lauren Connolly, Ioannis Kramvis, Mustafa Sahin, Zhigang He

Science. Author manuscript; available in PMC 2009 Mar 6.

Published in final edited form as: Science. 2008 Nov 7; 322(5903): 963–966. doi: 10.1126/science.1161566

PMCID:: PMC2652400

Abstract Article PDF–2.3M

Select item 116880313.

Regulation of mTOR and Cell Growth in Response to Energy Stress by REDD1

Avi Sofer, Kui Lei, Cory M. Johannessen, Leif W. Ellisen

Mol Cell Biol. 2005 Jul; 25(14): 5834–5845. doi: 10.1128/MCB.25.14.5834-5845.2005

PMCID:: PMC1168803

Abstract Article PDF–474K

Select item 31099214.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098015.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924116.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 13367117.

Identification of a Novel Hypoxia-Inducible Factor 1-Responsive Gene, RTP801, Involved in Apoptosis

Tzipora Shoshani, Alexander Faerman, Igor Mett, Elena Zelin, Tamar Tenne, Svetlana Gorodin, Yana Moshel, Shlomo Elbaz, Andrei Budanov, Ayelet Chajut, Hagar Kalinski, Iris Kamer, Ada Rozen, Orna Mor, Eli Keshet, Dena Leshkowitz, Paz Einat, Rami Skaliter, Elena Feinstein

Mol Cell Biol. 2002 Apr; 22(7): 2283–2293. doi: 10.1128/MCB.22.7.2283-2293.2002

PMCID:: PMC133671

Abstract Article PDF–766K

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