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Items: 1 to 20 of 30

1.
TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets
Atara Neugroschl, Irina E. Catrina
PLoS Comput Biol. 2023 Aug; 19(8): e1011418. Published online 2023 Aug 25. doi: 10.1371/journal.pcbi.1011418
PMCID:
PMC10484449
AbstractArticlePDF–3.1M
2.
Harnessing the paradoxical phenotypes of APOE ɛ2 and APOE ɛ4 to identify genetic modifiers in Alzheimer's disease
Young Won Kim, Ismael Al‐Ramahi, Amanda Koire, Stephen J. Wilson, Daniel M. Konecki, Samantha Mota, Shirin Soleimani, Juan Botas, Olivier Lichtarge
Alzheimers Dement. 2021 May; 17(5): 831–846. Published online 2020 Dec 7. doi: 10.1002/alz.12240
PMCID:
PMC8247413
AbstractArticlePDF–1.9M
3.
GWAS for lifespan and decline in climbing ability in flies upon dietary restriction reveal decima as a mediator of insulin-like peptide production
Kenneth A. Wilson, Jennifer N. Beck, Christopher S. Nelson, Tyler A. Hilsabeck, Daniel Promislow, Rachel B. Brem, Pankaj Kapahi
Curr Biol. Author manuscript; available in PMC 2021 Jul 20.
Published in final edited form as: Curr Biol. 2020 Jul 20; 30(14): 2749–2760.e3. Published online 2020 Jun 4. doi: 10.1016/j.cub.2020.05.020
PMCID:
PMC7375902
AbstractArticlePDF–2.4M
4.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
5.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
6.
High-content behavioral profiling reveals neuronal genetic network modulating Drosophila larval locomotor program
Boanerges Aleman-Meza, Mario Loeza-Cabrera, Omar Peña-Ramos, Michael Stern, Weiwei Zhong
BMC Genet. 2017; 18: 40. Published online 2017 May 12. doi: 10.1186/s12863-017-0513-7
PMCID:
PMC5429570
AbstractArticlePDF–919K
7.
Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis
Wei-Hsiang Lin, Carlo N. G. Giachello, Richard A. Baines
Dis Model Mech. 2017 Feb 1; 10(2): 141–150. doi: 10.1242/dmm.027045
PMCID:
PMC5312004
AbstractArticle
8.
Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing
Alborz Mazloomian, Irmtraud M Meyer
RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703
PMCID:
PMC4829317
AbstractArticlePDF–609K
9.
Tachykinin acts upstream of autocrine Hedgehog signaling during nociceptive sensitization in Drosophila
Seol Hee Im, Kendra Takle, Juyeon Jo, Daniel T Babcock, Zhiguo Ma, Yang Xiang, Michael J Galko
eLife. 2015; 4: e10735. Published online 2015 Nov 17. doi: 10.7554/eLife.10735
PMCID:
PMC4739760
AbstractArticlePDF–3.5M
10.
Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach
Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera
BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3
PMCID:
PMC4570697
AbstractArticlePDF–2.0M
11.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
12.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
13.
The transcription factor Cabut coordinates energy metabolism and the circadian clock in response to sugar sensing
Osnat Bartok, Mari Teesalu, Reut Ashwall-Fluss, Varun Pandey, Mor Hanan, Bohdana M Rovenko, Minna Poukkula, Essi Havula, Arieh Moussaieff, Sadanand Vodala, Yaakov Nahmias, Sebastian Kadener, Ville Hietakangas
EMBO J. 2015 Jun 3; 34(11): 1538–1553. Published online 2015 Apr 27. doi: 10.15252/embj.201591385
PMCID:
PMC4474529
AbstractArticlePDF–1.7M
14.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
15.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
16.
Functional Analysis of PGRP-LA in Drosophila Immunity
Mathilde Gendrin, Anna Zaidman-Rémy, Nichole A. Broderick, Juan Paredes, Mickaël Poidevin, Alain Roussel, Bruno Lemaitre
PLoS One. 2013; 8(7): e69742. Published online 2013 Jul 26. doi: 10.1371/journal.pone.0069742
PMCID:
PMC3724876
AbstractArticlePDF–1.6M
17.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
18.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
19.
Proteomic and Functional Genomic Landscape of Receptor Tyrosine Kinase and Ras to Extracellular Signal–Regulated Kinase Signaling
Adam A. Friedman, George Tucker, Rohit Singh, Dong Yan, Arunachalam Vinayagam, Yanhui Hu, Richard Binari, Pengyu Hong, Xiaoyun Sun, Maura Porto, Svetlana Pacifico, Thilakam Murali, Russell L. Finley, Jr., John M. Asara, Bonnie Berger, Norbert Perrimon
Sci Signal. Author manuscript; available in PMC 2012 Sep 11.
Published in final edited form as: Sci Signal. 2011 Oct 25; 4(196): rs10. Published online 2011 Oct 25. doi: 10.1126/scisignal.2002029
PMCID:
PMC3439136
AbstractArticlePDF–2.4M
20.
Dynamic, mating-induced gene expression changes in female head and brain tissues of Drosophila melanogaster
Justin E Dalton, Tanvi S Kacheria, Simon RV Knott, Matthew S Lebo, Allison Nishitani, Laura E Sanders, Emma J Stirling, Ari Winbush, Michelle N Arbeitman
BMC Genomics. 2010; 11: 541. Published online 2010 Oct 6. doi: 10.1186/1471-2164-11-541
PMCID:
PMC3091690
AbstractArticlePDF–395K

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