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Select item 95876501.

Profiling ATM regulated genes in Drosophila at physiological condition and after ionizing radiation

Jun Liu, Tianyu Jin, Lanxi Ran, Ze Zhao, Rui Zhu, Gangcai Xie, Xiaolin Bi

Hereditas. 2022; 159: 41. Published online 2022 Oct 21. doi: 10.1186/s41065-022-00254-9

PMCID:: PMC9587650

Abstract Article PDF–3.7M

Select item 91624502.

To be or not be (in the LAD): emerging roles of lamin proteins in transcriptional regulation

Ezequiel Nazer

Biochem Soc Trans. 2022 Apr 29; 50(2): 1035–1044. Published online 2022 Apr 19. doi: 10.1042/BST20210858

PMCID:: PMC9162450

Abstract Article PDF–1.4M

Select item 71748443.

Single-cyst transcriptome analysis of Drosophila male germline stem cell lineage

Zhen Shi, Cindy Lim, Vuong Tran, Kairong Cui, Keji Zhao, Xin Chen

Development. 2020 Apr 15; 147(8): dev184259. Published online 2020 Apr 12. doi: 10.1242/dev.184259

PMCID:: PMC7174844

Abstract Article

Select item 65040034.

Distinct gene-selective roles for a network of core promoter factors in Drosophila neural stem cell identity

Alexandre Neves, Robert N. Eisenman

Biol Open. 2019 Apr 15; 8(4): bio042168. Published online 2019 Apr 15. doi: 10.1242/bio.042168

PMCID:: PMC6504003

Abstract Article PDF–4.4M

Select item 58640895.

Argonaute2 and LaminB modulate gene expression by controlling chromatin topology

Ezequiel Nazer, Ryan K. Dale, Madoka Chinen, Behram Radmanesh, Elissa P. Lei

PLoS Genet. 2018 Mar; 14(3): e1007276. Published online 2018 Mar 12. doi: 10.1371/journal.pgen.1007276

PMCID:: PMC5864089

Abstract Article PDF–7.1M

Select item 57078056.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890027.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 49280478.

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair

Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999

PMCID:: PMC4928047

Abstract Article PDF–3.1M

Select item 45470959.

Genome-wide errant targeting by Hairy

Kurtulus Kok, Ahmet Ay, Li M Li, David N Arnosti

eLife. 2015; 4: e06394. Published online 2015 Aug 25. doi: 10.7554/eLife.06394

PMCID:: PMC4547095

Abstract Article PDF–3.6M

Select item 452833010.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832911.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288712.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152713.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 417721414.

tBRD-1 Selectively Controls Gene Activity in the Drosophila Testis and Interacts with Two New Members of the Bromodomain and Extra-Terminal (BET) Family

Ina Theofel, Marek Bartkuhn, Tim Hundertmark, Thomas Boettger, Stefanie M. K. Gärtner, Katja Leser, Stephan Awe, Michael Schipper, Renate Renkawitz-Pohl, Christina Rathke

PLoS One. 2014; 9(9): e108267. Published online 2014 Sep 24. doi: 10.1371/journal.pone.0108267

PMCID:: PMC4177214

Abstract Article PDF–6.9M

Select item 367499715.

The RNA Export Factor, Nxt1, Is Required for Tissue Specific Transcriptional Regulation

Simona Caporilli, Yachuan Yu, Jianqiao Jiang, Helen White-Cooper

PLoS Genet. 2013 Jun; 9(6): e1003526. Published online 2013 Jun 6. doi: 10.1371/journal.pgen.1003526

PMCID:: PMC3674997

Abstract Article PDF–15M

Select item 364197116.

Combinatorial control of temporal gene expression in the Drosophila wing by enhancers and core promoters

David D O’Keefe, Sean R Thomas, Kelsey Bolin, Ellen Griggs, Bruce A Edgar, Laura A Buttitta

BMC Genomics. 2012; 13: 498. Published online 2012 Sep 20. doi: 10.1186/1471-2164-13-498

PMCID:: PMC3641971

Abstract Article PDF–1.4M

Select item 356703017.

Anent the Genomics of Spermatogenesis in Drosophila melanogaster

Dan L. Lindsley, John Roote, James A. Kennison

PLoS One. 2013; 8(2): e55915. Published online 2013 Feb 7. doi: 10.1371/journal.pone.0055915

PMCID:: PMC3567030

Abstract Article PDF–572K

Select item 353067718.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946719.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 346943920.

Transcriptional regulation during Drosophila spermatogenesis

Cindy Lim, Lama Tarayrah, Xin Chen

Spermatogenesis. 2012 Jul 1; 2(3): 158–166. doi: 10.4161/spmg.21775

PMCID:: PMC3469439

Abstract Article PDF–649K

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