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Items: 1 to 20 of 28

1.
FAK mediates hypoxia‐induced pulmonary artery smooth muscle cell proliferation by modulating mitochondrial transcription termination factor 1/cyclin D1
Chunlong Lin, Hui Yang, Qiong Luo, Qi Liu
Clin Transl Sci. 2024 Mar; 17(3): e13767. Published online 2024 Mar 15. doi: 10.1111/cts.13767
PMCID:
PMC10941516
AbstractArticlePDF–3.4M
2.
N6-methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation
Yuanming Cheng, Wei Xie, Brian F Pickering, Karen L Chu, Angela M Savino, Xuejing Yang, Hanzhi Luo, Diu TT Nguyen, Shanlan Mo, Ersilia Barin, Anthony Velleca, Thomas Rohwetter, Dinshaw J Patel, Samie R Jaffrey, Michael G Kharas
Cancer Cell. Author manuscript; available in PMC 2022 Jul 12.
Published in final edited form as: Cancer Cell. 2021 Jul 12; 39(7): 958–972.e8. Published online 2021 May 27. doi: 10.1016/j.ccell.2021.04.017
PMCID:
PMC8282764
AbstractArticlePDF–3.4M
3.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
4.
Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing
Emily C. Freund, Anne L. Sapiro, Qin Li, Sandra Linder, James J. Moresco, John R. Yates, III, Jin Billy Li
Cell Rep. Author manuscript; available in PMC 2020 Jun 21.
Published in final edited form as: Cell Rep. 2020 May 19; 31(7): 107656. doi: 10.1016/j.celrep.2020.107656
PMCID:
PMC7306178
AbstractArticlePDF–1.8M
5.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
6.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
7.
Mitochondrial transcription termination factor 1 directs polar replication fork pausing
Yonghong Shi, Viktor Posse, Xuefeng Zhu, Anne K. Hyvärinen, Howard T. Jacobs, Maria Falkenberg, Claes M. Gustafsson
Nucleic Acids Res. 2016 Jul 8; 44(12): 5732–5742. Published online 2016 Apr 25. doi: 10.1093/nar/gkw302
PMCID:
PMC4937320
AbstractArticlePDF–1.8M
8.
Base flipping by MTERF1 can accommodate multiple conformations and occurs in a stepwise fashion
James Byrnes, Kevin Hauser, Leah Norona, Edison Mejia, Carlos Simmerling, Miguel Garcia-Diaz
J Mol Biol. Author manuscript; available in PMC 2017 Jun 19.
Published in final edited form as: J Mol Biol. 2016 Jun 19; 428(12): 2542–2556. Published online 2015 Oct 30. doi: 10.1016/j.jmb.2015.10.021
PMCID:
PMC4851923
AbstractArticlePDF–1.1M
9.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
10.
New interaction partners for Nek4.1 and Nek4.2 isoforms: from the DNA damage response to RNA splicing
Fernanda Luisa Basei, Gabriela Vaz Meirelles, Germanna Lima Righetto, Deivid Lucas dos Santos Migueleti, Juliana Helena Costa Smetana, Jörg Kobarg
Proteome Sci. 2015; 13: 11. Published online 2015 Feb 26. doi: 10.1186/s12953-015-0065-6
PMCID:
PMC4367857
AbstractArticlePDF–3.1M
11.
Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes
Xu Li, Wenqi Wang, Jiadong Wang, Anna Malovannaya, Yuanxin Xi, Wei Li, Rudy Guerra, David H Hawke, Jun Qin, Junjie Chen
Mol Syst Biol. 2015 Jan; 11(1): 775. Published online 2015 Jan 21. doi: 10.15252/msb.20145504
PMCID:
PMC4332150
AbstractArticlePDF–2.8M
12.
A bifunctional protein regulates mitochondrial protein synthesis
Tara R. Richman, Stefan M.K. Davies, Anne-Marie J. Shearwood, Judith A. Ermer, Louis H. Scott, Moira E. Hibbs, Oliver Rackham, Aleksandra Filipovska
Nucleic Acids Res. 2014 May 1; 42(9): 5483–5494. Published online 2014 Mar 5. doi: 10.1093/nar/gku179
PMCID:
PMC4027184
AbstractArticlePDF–6.5M
13.
Novel Genetic Loci Identified for the Pathophysiology of Childhood Obesity in the Hispanic Population
Anthony G. Comuzzie, Shelley A. Cole, Sandra L. Laston, V. Saroja Voruganti, Karin Haack, Richard A. Gibbs, Nancy F. Butte
PLoS One. 2012; 7(12): e51954. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0051954
PMCID:
PMC3522587
AbstractArticlePDF–130K
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
Inherited Variants in Mitochondrial Biogenesis Genes May Influence Epithelial Ovarian Cancer Risk
Jennifer Permuth-Wey, Y. Ann Chen, Ya-Yu Tsai, Zhihua Chen, Xiaotao Qu, Johnathan M. Lancaster, Heather Stockwell, Getachew Dagne, Edwin Iversen, Harvey Risch, Jill Barnholtz-Sloan, Julie M. Cunningham, Robert A. Vierkant, Brooke L. Fridley, Rebecca Sutphen, John McLaughlin, Steven A. Narod, Ellen L. Goode, Joellen M. Schildkraut, David Fenstermacher, Catherine M. Phelan, Thomas A. Sellers
Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2012 Jun 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2011 Jun; 20(6): 1131–1145. Published online 2011 Mar 29. doi: 10.1158/1055-9965.EPI-10-1224
PMCID:
PMC3111851
AbstractArticlePDF–838K
16.
Mitochondrial transcription: How does it end?
James Byrnes, Miguel Garcia-Diaz
Transcription. 2011 Jan-Feb; 2(1): 32–36. Published online 2010 Oct 22. doi: 10.4161/trns.2.1.14006
PMCID:
PMC3023645
AbstractArticlePDF–383K
17.
Effects on mitochondrial transcription of manipulating mTERF protein levels in cultured human HEK293 cells
Anne K Hyvärinen, Mona K Kumanto, Sanna K Marjavaara, Howard T Jacobs
BMC Mol Biol. 2010; 11: 72. Published online 2010 Sep 16. doi: 10.1186/1471-2199-11-72
PMCID:
PMC2955023
AbstractArticlePDF–755K
18.
Genetic Variants in Nuclear-Encoded Mitochondrial Genes Influence AIDS Progression
Sher L. Hendrickson, James A. Lautenberger, Leslie Wei Chinn, Michael Malasky, Efe Sezgin, Lawrence A. Kingsley, James J. Goedert, Gregory D. Kirk, Edward D. Gomperts, Susan P. Buchbinder, Jennifer L. Troyer, Stephen J. O'Brien
PLoS One. 2010; 5(9): e12862. Published online 2010 Sep 21. doi: 10.1371/journal.pone.0012862
PMCID:
PMC2943476
AbstractArticlePDF–461K
19.
Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score
Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl
Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159
Correction in:
Mol Med. 2012; 18(1): 729.
PMCID:
PMC2896464
AbstractArticlePDF–2.4M
20.
Helix unwinding and base flipping enable human MTERF1 to terminate mitochondrial transcription
Elena Yakubovskaya, Edison Mejia, James Byrnes, Elena Hambardjieva, Miguel Garcia-Diaz
Cell. Author manuscript; available in PMC 2011 Jun 11.
Published in final edited form as: Cell. 2010 Jun 11; 141(6): 982–993. doi: 10.1016/j.cell.2010.05.018
PMCID:
PMC2887341
AbstractArticlePDF–1.8M

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