PMC Links for GEO Profiles (Select 73568361) - PMC

Select item 94378481.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 94281262.

Proteasomal subunit depletions differentially affect germline integrity in C. elegans

Lourds Michelle Fernando, Cristina Quesada-Candela, Makaelah Murray, Caroline Ugoaru, Judith L. Yanowitz, Anna K. Allen

Front Cell Dev Biol. 2022; 10: 901320. Published online 2022 Aug 17. doi: 10.3389/fcell.2022.901320

PMCID:: PMC9428126

Abstract Article PDF–4.0M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311834.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 64596746.

Endoplasmic reticulum-associated SKN-1A/Nrf1 mediates a cytoplasmic unfolded protein response and promotes longevity

Nicolas J Lehrbach, Gary Ruvkun

eLife. 2019; 8: e44425. Published online 2019 Apr 11. doi: 10.7554/eLife.44425

PMCID:: PMC6459674

Abstract Article PDF–3.9M

Select item 62165907.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 48218038.

HSF-1 activates the ubiquitin proteasome system to promote non-apoptotic developmental cell death in C. elegans

Maxime J Kinet, Jennifer A Malin, Mary C Abraham, Elyse S Blum, Melanie R Silverman, Yun Lu, Shai Shaham

eLife. 2016; 5: e12821. Published online 2016 Mar 8. doi: 10.7554/eLife.12821

PMCID:: PMC4821803

Abstract Article PDF–3.2M

Select item 43810829.

The ribonucleotidyl transferase USIP-1 acts with SART3 to promote U6 snRNA recycling

Stefan Rüegger, Takashi S. Miki, Daniel Hess, Helge Großhans

Nucleic Acids Res. 2015 Mar 31; 43(6): 3344–3357. Published online 2015 Mar 9. doi: 10.1093/nar/gkv196

PMCID:: PMC4381082

Abstract Article PDF–4.8M

Select item 310207710.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 287651211.

skn-1-Dependent and -Independent Regulation of aip-1 Expression following Metabolic Stress in Caenorhabditis elegans

Annabel A. Ferguson, Mitchell G. Springer, Alfred L. Fisher

Mol Cell Biol. 2010 Jun; 30(11): 2651–2667. Published online 2010 Mar 29. doi: 10.1128/MCB.01340-09

PMCID:: PMC2876512

Abstract Article PDF–3.6M

Select item 268203312.

The WD40 Repeat Protein WDR-23 Functions with the CUL4/DDB1 Ubiquitin Ligase To Regulate Nuclear Abundance and Activity of SKN-1 in Caenorhabditis elegans

Keith P. Choe, Aaron J. Przybysz, Kevin Strange

Mol Cell Biol. 2009 May; 29(10): 2704–2715. Published online 2009 Mar 9. doi: 10.1128/MCB.01811-08

PMCID:: PMC2682033

Abstract Article PDF–2.2M

Select item 260356413.

Genome-wide RNAi screen and in vivo protein aggregation reporters identify degradation of damaged proteins as an essential hypertonic stress response

Keith P. Choe, Kevin Strange

Am J Physiol Cell Physiol. 2008 Dec; 295(6): C1488–C1498. Published online 2008 Oct 1. doi: 10.1152/ajpcell.00450.2008

PMCID:: PMC2603564

Abstract Article

Select item 259647814.

A protein domain-based interactome network for C. elegans early embryogenesis

Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal

Cell. Author manuscript; available in PMC 2009 Aug 8.

Published in final edited form as: Cell. 2008 Aug 8; 134(3): 534–545. doi: 10.1016/j.cell.2008.07.009

Correction in:: volume 151 on page 1633

PMCID:: PMC2596478

Abstract Article PDF–4.0M

Select item 185159715.

Regulation of Caenorhabditis elegans lifespan by a proteasomal E3 ligase complex

Arjumand Ghazi, Sivan Henis-Korenblit, Cynthia Kenyon

Proc Natl Acad Sci U S A. 2007 Apr 3; 104(14): 5947–5952. Published online 2007 Mar 28. doi: 10.1073/pnas.0700638104

PMCID:: PMC1851597

Abstract Article PDF–691K

Select item 169894916.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

Select item 108828917.

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

Julius Halaschek-Wiener, Jaswinder S. Khattra, Sheldon McKay, Anatoli Pouzyrev, Jeff M. Stott, George S. Yang, Robert A. Holt, Steven J.M. Jones, Marco A. Marra, Angela R. Brooks-Wilson, Donald L. Riddle

Genome Res. 2005 May; 15(5): 603–615. doi: 10.1101/gr.3274805

PMCID:: PMC1088289

Abstract Article PDF–632K

Select item 108403918.

A protein–protein interaction map of the Caenorhabditis elegans 26S proteasome

Anne Davy, Paul Bello, Nicolas Thierry-Mieg, Philippe Vaglio, Joseph Hitti, Lynn Doucette-Stamm, Danielle Thierry-Mieg, Jérôme Reboul, Simon Boulton, Albertha J. M. Walhout, Olivier Coux, Marc Vidal

EMBO Rep. 2001 Sep 15; 2(9): 821–828. doi: 10.1093/embo-reports/kve184

PMCID:: PMC1084039

Abstract Article PDF–887K

Select item 31122119.

Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”

Lisa R. Matthews, Philippe Vaglio, Jérôme Reboul, Hui Ge, Brian P. Davis, James Garrels, Sylvie Vincent, Marc Vidal

Genome Res. 2001 Dec; 11(12): 2120–2126. doi: 10.1101/gr.205301

PMCID:: PMC311221

Abstract Article PDF–510K

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