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Items: 20

1.
Epigallocatechin-3-gallate protects cardiomyocytes from hypoxia-reoxygenation damage via raising autophagy related 4C expression
Ping Liu, Jin Huang, Wanzhen Mei, Xingfang Zeng, Cheng Wang, Chuan Wen, Jing Xu
Bioengineered. 2021; 12(2): 9496–9506. Published online 2021 Dec 2. doi: 10.1080/21655979.2021.1996018
PMCID:
PMC8810140
AbstractArticlePDF–2.0M
2.
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Aimee Beck, Laura Donohue, Ian Ferguson, Margaret G. Guo, Deepti S. Rao, Weili Miao, David Reynolds, Xue Yang, Yang Zhao, Yen-Yu Yang, Catherine Blish, Yinsheng Wang, Paul A. Khavari
PLoS Pathog. 2021 Oct; 17(10): e1009412. Published online 2021 Oct 1. doi: 10.1371/journal.ppat.1009412
PMCID:
PMC8513853
AbstractArticlePDF–4.1M
3.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
4.
Clinicopathological and prognostic significance of caveolin-1 and ATG4C expression in the epithelial ovarian cancer
Yuyang Zeng, Mengxi Chen, Sridha Ganesh, Shunze Hu, Honglei Chen
PLoS One. 2020; 15(5): e0232235. Published online 2020 May 13. doi: 10.1371/journal.pone.0232235
PMCID:
PMC7219755
AbstractArticlePDF–4.1M
5.
Knockdown ATG4C inhibits gliomas progression and promotes temozolomide chemosensitivity by suppressing autophagic flux
Zhi-peng Wen, Wen-jing Zeng, Yan-hong Chen, He Li, Jie-ya Wang, Quan Cheng, Jing Yu, Hong-hao Zhou, Zheng-zheng Liu, Jian Xiao, Xiao-ping Chen
J Exp Clin Cancer Res. 2019; 38: 298. Published online 2019 Jul 10. doi: 10.1186/s13046-019-1287-8
PMCID:
PMC6617611
AbstractArticlePDF–4.6M
6.
Redundancy of human ATG4 protease isoforms in autophagy and LC3/GABARAP processing revealed in cells
Alexander Agrotis, Niccolo Pengo, Jemima J. Burden, Robin Ketteler
Autophagy. 2019; 15(6): 976–997. Published online 2019 Feb 1. doi: 10.1080/15548627.2019.1569925
PMCID:
PMC6526816
AbstractArticlePDF–5.4M
7.
Delipidation of mammalian Atg8-family proteins by each of the four ATG4 proteases
Karlina J. Kauffman, Shenliang Yu, Jiaxin Jin, Brian Mugo, Nathan Nguyen, Aidan O'Brien, Shanta Nag, Alf Håkon Lystad, Thomas J. Melia
Autophagy. 2018; 14(6): 992–1010. Published online 2018 Apr 10. doi: 10.1080/15548627.2018.1437341
PMCID:
PMC6103404
AbstractArticlePDF–2.2M
8.
Proteomic and Biochemical Comparison of the Cellular Interaction Partners of Human VPS33A and VPS33B
Morag R. Hunter, Geoffrey G. Hesketh, Tomasz H. Benedyk, Anne-Claude Gingras, Stephen C. Graham
J Mol Biol. 2018 Jul 6; 430(14): 2153–2163. doi: 10.1016/j.jmb.2018.05.019
PMCID:
PMC6005816
AbstractArticlePDF–1.6M
9.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
10.
ATG4B contains a C-terminal LIR motif important for binding and efficient cleavage of mammalian orthologs of yeast Atg8
Mads Skytte Rasmussen, Stéphane Mouilleron, Birendra Kumar Shrestha, Martina Wirth, Rebecca Lee, Kenneth Bowitz Larsen, Yakubu Abudu Princely, Nicola O'Reilly, Eva Sjøttem, Sharon A. Tooze, Trond Lamark, Terje Johansen
Autophagy. 2017; 13(5): 834–853. Published online 2017 Feb 15. doi: 10.1080/15548627.2017.1287651
PMCID:
PMC5446077
AbstractArticlePDF–1.9M
11.
ATM kinase sustains breast cancer stem-like cells by promoting ATG4C expression and autophagy
Martina Antonelli, Flavie Strappazzon, Ivan Arisi, Rossella Brandi, Mara D’Onofrio, Manolo Sambucci, Gwenola Manic, Ilio Vitale, Daniela Barilà, Venturina Stagni
Oncotarget. 2017 Mar 28; 8(13): 21692–21709. Published online 2017 Feb 20. doi: 10.18632/oncotarget.15537
PMCID:
PMC5400616
AbstractArticlePDF–9.0M
12.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
13.
Genetic loci associated with circulating levels of very long-chain saturated fatty acids
Rozenn N. Lemaitre, Irena B. King, Edmond K. Kabagambe, Jason H. Y. Wu, Barbara McKnight, Ani Manichaikul, Weihua Guan, Qi Sun, Daniel I. Chasman, Millennia Foy, Lu Wang, Jingwen Zhu, David S. Siscovick, Michael Y. Tsai, Donna K. Arnett, Bruce M. Psaty, Luc Djousse, Yii-Der I. Chen, Weihong Tang, Lu-Chen Weng, Hongyu Wu, Majken K. Jensen, Audrey Y. Chu, David R. Jacobs, Jr., Stephen S. Rich, Dariush Mozaffarian, Lyn Steffen, Eric B. Rimm, Frank B. Hu, Paul M. Ridker, Myriam Fornage, Yechiel Friedlander
J Lipid Res. 2015 Jan; 56(1): 176–184. doi: 10.1194/jlr.M052456
PMCID:
PMC4274065
AbstractArticlePDF–1.1M
14.
Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women
Damien C. Croteau-Chonka, Amanda F. Marvelle, Ethan M. Lange, Nanette R. Lee, Linda S. Adair, Leslie A. Lange, Karen L. Mohlke
Obesity (Silver Spring) Author manuscript; available in PMC 2011 Nov 1.
Published in final edited form as: Obesity (Silver Spring). 2011 May; 19(5): 1019–1027. Published online 2010 Oct 21. doi: 10.1038/oby.2010.256
PMCID:
PMC3046220
AbstractArticlePDF–461K
15.
Kinetics Comparisons of Mammalian Atg4 Homologues Indicate Selective Preferences toward Diverse Atg8 Substrates
Min Li, Yifeng Hou, Jinsong Wang, Xiaoyun Chen, Zhi-Ming Shao, Xiao-Ming Yin
J Biol Chem. 2011 Mar 4; 286(9): 7327–7338. Published online 2010 Dec 22. doi: 10.1074/jbc.M110.199059
PMCID:
PMC3044989
AbstractArticlePDF–1.8M
16.
Network organization of the human autophagy system
Christian Behrends, Mathew E. Sowa, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2011 Jan 1.
Published in final edited form as: Nature. 2010 Jul 1; 466(7302): 68–76. Published online 2010 Jun 20. doi: 10.1038/nature09204
PMCID:
PMC2901998
AbstractArticlePDF–1.4M
17.
Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans
Sekar Kathiresan, Olle Melander, Candace Guiducci, Aarti Surti, Noël P Burtt, Mark J Rieder, Gregory M Cooper, Charlotta Roos, Benjamin F Voight, Aki S Havulinna, Björn Wahlstrand, Thomas Hedner, Dolores Corella, E Shyong Tai, Jose M Ordovas, Göran Berglund, Erkki Vartiainen, Pekka Jousilahti, Bo Hedblad, Marja-Riitta Taskinen, Christopher Newton-Cheh, Veikko Salomaa, Leena Peltonen, Leif Groop, David M Altshuler, Marju Orho-Melander
Nat Genet. Author manuscript; available in PMC 2009 May 14.
Published in final edited form as: Nat Genet. 2008 Feb; 40(2): 189–197. Published online 2008 Jan 13. doi: 10.1038/ng.75
Correction in:
volume 40 on page 1384
PMCID:
PMC2682493
AbstractArticlePDF–312K
18.
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
PMCID:
PMC1356129
AbstractArticlePDF–438K
19.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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