PMC Links for GEO Profiles (Select 78658298) - PMC

Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 72187952.

Reassessment of the Transport Mechanism of the Human Zinc Transporter SLC39A2

Marie C. Franz, Jonai Pujol-Giménez, Nicolas Montalbetti, Miguel Fernandez-Tenorio, Timothy R. DeGrado, Ernst Niggli, Michael F. Romero, Matthias A. Hediger

Biochemistry. Author manuscript; available in PMC 2020 May 13.

Published in final edited form as: Biochemistry. 2018 Jul 3; 57(26): 3976–3986. Published online 2018 Jun 7. doi: 10.1021/acs.biochem.8b00511

PMCID:: PMC7218795

Abstract Article PDF–1.5M

Select item 71699833.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 65271564.

Unraveling the structural elements of pH sensitivity and substrate binding in the human zinc transporter SLC39A2 (ZIP2)

Gergely Gyimesi, Giuseppe Albano, Daniel G. Fuster, Matthias A. Hediger, Jonai Pujol-Giménez

J Biol Chem. 2019 May 17; 294(20): 8046–8063. Published online 2020 Aug 26. doi: 10.1074/jbc.RA118.006113

Correction in:: J Biol Chem. 2020 Mar 27; 295(13): 4369.

PMCID:: PMC6527156

Abstract Article PDF–7.7M

Select item 58285515.

Zinc Deficiency via a Splice Switch in Zinc Importer ZIP2/SLC39A2 Causes Cystic Fibrosis-Associated MUC5AC Hypersecretion in Airway Epithelial Cells

Shunsuke Kamei, Haruka Fujikawa, Hirofumi Nohara, Keiko Ueno-Shuto, Kasumi Maruta, Ryunosuke Nakashima, Taisei Kawakami, Chizuru Matsumoto, Yuki Sakaguchi, Tomomi Ono, Mary Ann Suico, Richard C. Boucher, Dieter C. Gruenert, Toru Takeo, Naomi Nakagata, Jian-Dong Li, Hirofumi Kai, Tsuyoshi Shuto

EBioMedicine. 2018 Jan; 27: 304–316. Published online 2017 Dec 20. doi: 10.1016/j.ebiom.2017.12.025

PMCID:: PMC5828551

Abstract Article PDF–2.0M

Select item 53669506.

Zinc deficiency and low enterocyte zinc transporter expression in human patients with autism related mutations in SHANK3

Stefanie Pfaender, Ann Katrin Sauer, Simone Hagmeyer, Katharina Mangus, Leonhard Linta, Stefan Liebau, Juergen Bockmann, Guillaume Huguet, Thomas Bourgeron, Tobias M. Boeckers, Andreas M. Grabrucker

Sci Rep. 2017; 7: 45190. Published online 2017 Mar 27. doi: 10.1038/srep45190

PMCID:: PMC5366950

Abstract Article PDF–2.2M

Select item 41181087.

ZIP2 Protein, a Zinc Transporter, Is Associated with Keratinocyte Differentiation

Yu Inoue, Seiji Hasegawa, Sadanori Ban, Takaaki Yamada, Yasushi Date, Hiroshi Mizutani, Satoru Nakata, Masahiko Tanaka, Naohide Hirashima

J Biol Chem. 2014 Aug 1; 289(31): 21451–21462. Published online 2014 Jun 16. doi: 10.1074/jbc.M114.560821

PMCID:: PMC4118108

Abstract Article PDF–4.0M

Select item 32785478.

SLC39A2 and FSIP1 polymorphisms as potential modifiers of arsenic-related bladder cancer

Margaret R. Karagas, Angeline S. Andrew, Heather H. Nelson, Zhongze Li, Tracy Punshon, Alan Schned, Carmen J. Marsit, J. Steven Morris, Jason H. Moore, Anna L. Tyler, Diane Gilbert-Diamond, Mary-Lou Guerinot, Karl T. Kelsey

Hum Genet. Author manuscript; available in PMC 2012 Mar 1.

Published in final edited form as: Hum Genet. 2012 Mar; 131(3): 453–461. Published online 2011 Sep 25. doi: 10.1007/s00439-011-1090-x

PMCID:: PMC3278547

Abstract Article PDF–998K

Select item 32783979.

Intrathecally synthesized IgG in multiple sclerosis cerebrospinal fluid recognizes identical epitopes over time

Xiaoli Yu, Mark Burgoon, Miyoko Green, Olga Barmina, Kathryn Dennison, Pointon, Molly Davis, Don Gilden

J Neuroimmunol. Author manuscript; available in PMC 2012 Feb 13.

Published in final edited form as: J Neuroimmunol. 2011 Dec 15; 240-241: 129–136. Published online 2011 Nov 12. doi: 10.1016/j.jneuroim.2011.10.009

PMCID:: PMC3278397

Abstract Article PDF–2.6M

Select item 322018610.

Genetic Susceptibility to Distinct Bladder Cancer Subphenotypes

Lin T. Guey, Montserrat García-Closas, Cristiane Murta-Nascimento, Josep Lloreta, Laia Palencia, Manolis Kogevinas, Nathaniel Rothman, Gemma Vellalta, Malu Calle, Gaëlle Marenne, Adonina Tardón, Alfredo Carrato, Reina García-Closas, Consol Serra, Debra T Silverman, Stephen Chanock, Francisco X. Real, Núria Malats

Eur Urol. Author manuscript; available in PMC 2011 Nov 18.

Published in final edited form as: Eur Urol. 2010 Feb; 57(2): 283–292. Published online 2009 Aug 12. doi: 10.1016/j.eururo.2009.08.001

PMCID:: PMC3220186

Abstract Article PDF–595K

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 278379912.

PTEN IDENTIFIED AS IMPORTANT RISK FACTOR OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE

H Dean Hosgood, III, Idan Menashe, Xingzhou He, Stephen Chanock, Qing Lan

Respir Med. Author manuscript; available in PMC 2010 Dec 1.

Published in final edited form as: Respir Med. 2009 Dec; 103(12): 1866–1870. Published online 2009 Jul 21. doi: 10.1016/j.rmed.2009.06.016

PMCID:: PMC2783799

Abstract Article PDF–315K

Select item 272285713.

Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway

H.Dean Hosgood, III, Idan Menashe, Min Shen, Meredith Yeager, Jeff Yuenger, Preetha Rajaraman, Xingzhou He, Nilanjan Chatterjee, Neil E. Caporaso, Yong Zhu, Stephen J. Chanock, Tongzhang Zheng, Qing Lan

Carcinogenesis. 2008 Oct; 29(10): 1938–1943. Published online 2008 Aug 1. doi: 10.1093/carcin/bgn178

PMCID:: PMC2722857

Abstract Article PDF–181K

Select item 266678114.

Polymorphisms in innate immunity genes and lung cancer risk in Xuanwei, China

Min Shen, Roel Vermeulen, Preetha Rajaraman, Idan Menashe, Xingzhou He, Robert S. Chapman, Meredith Yeager, Gilles Thomas, Laurie Burdett, Amy Hutchinson, Jeff Yuenger, Stephen Chanock, Qing Lan

Environ Mol Mutagen. Author manuscript; available in PMC 2010 May 1.

Published in final edited form as: Environ Mol Mutagen. 2009 May; 50(4): 285–290. doi: 10.1002/em.20452

PMCID:: PMC2666781

Abstract Article PDF–311K

Select item 189203515.

hZip2 and hZip3 zinc transporters are down regulated in human prostate adenocarcinomatous glands

Mohamed M Desouki, Joseph Geradts, Beatrice Milon, Renty B Franklin, Leslie C Costello

Mol Cancer. 2007; 6: 37. Published online 2007 Jun 5. doi: 10.1186/1476-4598-6-37

PMCID:: PMC1892035

Abstract Article PDF–857K

Select item 135612916.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406