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Items: 1 to 20 of 22

1.
A dual-activity topoisomerase complex regulates mRNA translation and turnover
Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang
Nucleic Acids Res. 2022 Jul 8; 50(12): 7013–7033. Published online 2022 Jun 24. doi: 10.1093/nar/gkac538
PMCID:
PMC9262614
AbstractArticlePDF–3.6M
2.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
3.
Conformational Selection Mechanism Provides Structural Insights into the Optimization of APC-Asef Inhibitors
Xinheng He, Ning Huang, Yuran Qiu, Jian Zhang, Yaqin Liu, Xiao-Lan Yin, Shaoyong Lu
Molecules. 2021 Feb; 26(4): 962. Published online 2021 Feb 11. doi: 10.3390/molecules26040962
PMCID:
PMC7918825
AbstractArticlePDF–32M
4.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
5.
Activation of Rac GTPase by p75 Is Necessary for c-jun N-Terminal Kinase-Mediated Apoptosis
Anthony W. Harrington, Ju Young Kim, Sung Ok Yoon
J Neurosci. 2002 Jan 1; 22(1): 156–166. doi: 10.1523/JNEUROSCI.22-01-00156.2002
PMCID:
PMC6757583
AbstractArticlePDF–582K
6.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M
7.
Truncated Adenomatous Polyposis Coli Mutation Induces Asef-Activated Golgi Fragmentation
Sang Bum Kim, Lu Zhang, Jimok Yoon, Jeon Lee, Jaewon Min, Wenlin Li, Nick V. Grishin, Young-Ah Moon, Woodring E. Wright, Jerry W. Shay
Mol Cell Biol. 2018 Sep 1; 38(17): e00135-18. Prepublished online 2018 Jun 4. Published online 2018 Aug 15. doi: 10.1128/MCB.00135-18
PMCID:
PMC6094051
AbstractArticlePDF–5.9M
8.
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination
Nila Roy Choudhury, Gregory Heikel, Maryia Trubitsyna, Peter Kubik, Jakub Stanislaw Nowak, Shaun Webb, Sander Granneman, Christos Spanos, Juri Rappsilber, Alfredo Castello, Gracjan Michlewski
BMC Biol. 2017; 15: 105. Published online 2017 Nov 8. doi: 10.1186/s12915-017-0444-9
PMCID:
PMC5678581
AbstractArticlePDF–3.2M
9.
Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing
Teng Fei, Yiwen Chen, Tengfei Xiao, Wei Li, Laura Cato, Peng Zhang, Maura B. Cotter, Michaela Bowden, Rosina T. Lis, Shuang G. Zhao, Qiu Wu, Felix Y. Feng, Massimo Loda, Housheng Hansen He, X. Shirley Liu, Myles Brown
Proc Natl Acad Sci U S A. 2017 Jun 27; 114(26): E5207–E5215. Published online 2017 Jun 13. doi: 10.1073/pnas.1617467114
PMCID:
PMC5495225
AbstractArticlePDF–1.3M
10.
Copy Number Variations in Candidate Genes and Intergenic Regions Affect Body Mass Index and Abdominal Obesity in Mexican Children
Diana Lizzete Antúnez-Ortiz, Eugenia Flores-Alfaro, Ana Isabel Burguete-García, Amélie Bonnefond, Jesús Peralta-Romero, Philippe Froguel, Mónica Espinoza-Rojo, Miguel Cruz
Biomed Res Int. 2017; 2017: 2432957. Published online 2017 Mar 27. doi: 10.1155/2017/2432957
PMCID:
PMC5385910
AbstractArticlePDF–764K
11.
Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer
Mark O. Kitchen, Richard T. Bryan, Richard D. Emes, John R. Glossop, Christopher Luscombe, K. K. Cheng, Maurice P. Zeegers, Nicholas D. James, Adam J. Devall, Charles A. Mein, Lyndon Gommersall, Anthony A. Fryer, William E. Farrell
Epigenetics. 2016 Mar; 11(3): 237–246. Published online 2016 Mar 1. doi: 10.1080/15592294.2016.1154246
PMCID:
PMC4854556
AbstractArticlePDF–967K
12.
Asef mediates HGF protective effects against LPS-induced lung injury and endothelial barrier dysfunction
Fanyong Meng, Angelo Meliton, Nurgul Moldobaeva, Gokhan Mutlu, Yoshihiro Kawasaki, Tetsu Akiyama, Anna A. Birukova
Am J Physiol Lung Cell Mol Physiol. 2015 Mar 1; 308(5): L452–L463. Published online 2014 Dec 24. doi: 10.1152/ajplung.00170.2014
PMCID:
PMC4346776
AbstractArticle
13.
Hepatocyte growth factor triggers distinct mechanisms of Asef and Tiam1 activation to induce endothelial barrier enhancement
Katherine Higginbotham, Yufeng Tian, Grzegorz Gawlak, Nurgul Moldobaeva, Alok Shah, Anna A. Birukova
Cell Signal. Author manuscript; available in PMC 2015 Nov 1.
Published in final edited form as: Cell Signal. 2014 Nov; 26(11): 2306–2316. Published online 2014 Aug 4. doi: 10.1016/j.cellsig.2014.07.032
PMCID:
PMC4241352
AbstractArticlePDF–651K
14.
Small rare recurrent deletions and reciprocal duplications in 2q21.1, including brain-specific ARHGEF4 and GPR148
Avinash V. Dharmadhikari, Sung-Hae L. Kang, Przemyslaw Szafranski, Richard E. Person, Srirangan Sampath, Siddharth K. Prakash, Patricia I. Bader, John A. Phillips, III, Vickie Hannig, Misti Williams, Sherry S. Vinson, Angus A. Wilfong, Tyler E. Reimschisel, William J. Craigen, Ankita Patel, Weimin Bi, James R. Lupski, John Belmont, Sau Wai Cheung, Pawel Stankiewicz
Hum Mol Genet. 2012 Aug 1; 21(15): 3345–3355. Published online 2012 Apr 27. doi: 10.1093/hmg/dds166
PMCID:
PMC3392111
AbstractArticlePDF–433K
15.
Comprehensive Analysis of Interactions between the Src-Associated Protein in Mitosis of 68 kDa and the Human Src-Homology 3 Proteome
Benedikt Asbach, Christine Ludwig, Kalle Saksela, Ralf Wagner
PLoS One. 2012; 7(6): e38540. Published online 2012 Jun 20. doi: 10.1371/journal.pone.0038540
PMCID:
PMC3379994
AbstractArticlePDF–581K
16.
Structural basis for the recognition of Asef by adenomatous polyposis coli
Zhenyi Zhang, Leyi Chen, Lei Gao, Kui Lin, Liang Zhu, Yang Lu, Xiaoshan Shi, Yuan Gao, Jing Zhou, Ping Xu, Jian Zhang, Geng Wu
Cell Res. 2012 Feb; 22(2): 372–386. Published online 2011 Jul 26. doi: 10.1038/cr.2011.119
PMCID:
PMC3271586
AbstractArticlePDF–2.7M
17.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
18.
A Human MAP Kinase Interactome
Sourav Bandyopadhyay, Chih-yuan Chiang, Jyoti Srivastava, Merril Gersten, Suhaila White, Russell Bell, Cornelia Kurschner, Christopher H. Martin, Mike Smoot, Sudhir Sahasrabudhe, Diane L. Barber, Sumit K. Chanda, Trey Ideker
Nat Methods. Author manuscript; available in PMC 2011 Apr 1.
Published in final edited form as: Nat Methods. 2010 Oct; 7(10): 801–805. doi: 10.1038/nmeth.1506
PMCID:
PMC2967489
AbstractArticlePDF–1.2M
19.
Adenomatous Polyposis Coli and Asef Function Downstream of Hepatocyte Growth Factor and Phosphatidylinositol 3-Kinase
Yoshihiro Kawasaki, Shinnosuke Tsuji, Masaki Sagara, Kanae Echizen, Yoko Shibata, Tetsu Akiyama
J Biol Chem. 2009 Aug 14; 284(33): 22436–22443. Published online 2009 Jun 12. doi: 10.1074/jbc.M109.020768
PMCID:
PMC2755965
AbstractArticlePDF–1.6M
20.
Asef2 Functions as a Cdc42 Exchange Factor and Is Stimulated by the Release of an Autoinhibitory Module from a Concealed C-Terminal Activation Element
Michael J. Hamann, Casey M. Lubking, Doris N. Luchini, Daniel D. Billadeau
Mol Cell Biol. 2007 Feb; 27(4): 1380–1393. Published online 2006 Dec 4. doi: 10.1128/MCB.01608-06
PMCID:
PMC1800726
AbstractArticlePDF–1.3M

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