PMC Links for GEO Profiles (Select 79993254) - PMC

Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang

Nucleic Acids Res. 2022 Jul 8; 50(12): 7013–7033. Published online 2022 Jun 24. doi: 10.1093/nar/gkac538

PMCID:: PMC9262614

Abstract Article PDF–3.6M

Select item 88411394.

Analysis of rs1864182 and rs1864183 variants in ATG10 gene and antineutrophil cytoplasmic autoantibody‐associated vasculitis in Chinese Guangxi population

Shanshan Huang, Jinlan Rao, Jingsi Wei, Qunshen Huang, Yan Zhu, Wei Li, Chao Xue

J Clin Lab Anal. 2022 Feb; 36(2): e24193. Published online 2021 Dec 27. doi: 10.1002/jcla.24193

PMCID:: PMC8841139

Abstract Article PDF–373K

Select item 81650305.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80771606.

A study on the potential role of autophagy‐related protein 10 as a biomarker for ulcerative colitis

Fatemeh Abbasi Teshnizi, Nasrin Kazemipour, Saeed Nazifi, Kamran Bagheri Lankarani, Masood Sepehrimanesh, Iman Razeghian Jahromi

Physiol Rep. 2021 Apr; 9(7): e14825. Published online 2021 Apr 27. doi: 10.14814/phy2.14825

PMCID:: PMC8077160

Abstract Article PDF–600K

Select item 77516757.

A new transcription factor ATG10S activates IFNL2 transcription by binding at an IRF1 site in HepG2 cells

Miao-Qing Zhang, Qiong Zhao, Jing-Pu Zhang

Autophagy. 2020; 16(12): 2167–2179. Published online 2020 Jan 29. doi: 10.1080/15548627.2020.1719681

PMCID:: PMC7751675

Abstract Article PDF–5.6M

Select item 77376108.

Receptor‐mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagy

Amelia E Ohnstad, Jose M Delgado, Brian J North, Isha Nasa, Arminja N Kettenbach, Sebastian W Schultz, Christopher J Shoemaker

EMBO J. 2020 Dec 15; 39(24): e104948. Published online 2020 Nov 23. doi: 10.15252/embj.2020104948

PMCID:: PMC7737610

Abstract Article PDF–3.7M

Select item 71699839.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 690037910.

Potentially functional variants of autophagy‐related genes are associated with the efficacy and toxicity of radiotherapy in patients with nasopharyngeal carcinoma

Zhiguang Yang, Zhaoyu Liu

Mol Genet Genomic Med. 2019 Dec; 7(12): e1030. Published online 2019 Nov 6. doi: 10.1002/mgg3.1030

PMCID:: PMC6900379

Abstract Article PDF–415K

Select item 616585911.

Differential Effects of Autophagy-Related 10 Protein on HCV Replication and Autophagy Flux Are Mediated by Its Cysteine⁴⁴ and Cysteine¹³⁵

Miao-Qing Zhang, Jian-Rui Li, Zong-Gen Peng, Jing-Pu Zhang

Front Immunol. 2018; 9: 2176. Published online 2018 Sep 24. doi: 10.3389/fimmu.2018.02176

PMCID:: PMC6165859

Abstract Article PDF–5.1M

Select item 559588712.

Dual Roles of Two Isoforms of Autophagy-related Gene ATG10 in HCV-Subgenomic replicon Mediated Autophagy Flux and Innate Immunity

Qiong Zhao, Zhan-Ying Hu, Jing-Pu Zhang, Jian-Dong Jiang, Yuan-yuan Ma, Jian-rui Li, Zong-gen Peng, Jin-hua Chen

Sci Rep. 2017; 7: 11250. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11105-3

PMCID:: PMC5595887

Abstract Article PDF–5.7M

Select item 553161113.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 461721114.

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2016 Jul 16.

Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043

PMCID:: PMC4617211

Abstract Article PDF–2.2M

Select item 459064615.

Burkholderia pseudomallei survival in lung epithelial cells benefits from miRNA-mediated suppression of ATG10

Qian Li, Yao Fang, Pan Zhu, Chun-yan Ren, Hai Chen, Jiang Gu, Yin-ping Jia, Kun Wang, Wen-de Tong, Wei-jun Zhang, Jing Pan, Dong-shui Lu, Bin Tang, Xu-hu Mao

Autophagy. 2015 Aug; 11(8): 1293–1307. Published online 2015 Sep 14. doi: 10.1080/15548627.2015.1058474

PMCID:: PMC4590646

Abstract Article PDF–1.7M

Select item 352759216.

Increased Expression of ATG10 in Colorectal Cancer Is Associated with Lymphovascular Invasion and Lymph Node Metastasis

Yoon Kyung Jo, Seung Cheol Kim, In Ja Park, So Jung Park, Dong-Hoon Jin, Seung-Woo Hong, Dong-Hyung Cho, Jin Cheon Kim

PLoS One. 2012; 7(12): e52705. Published online 2012 Dec 20. doi: 10.1371/journal.pone.0052705

PMCID:: PMC3527592

Abstract Article PDF–432K

Select item 323422717.

IRGM Is a Common Target of RNA Viruses that Subvert the Autophagy Network

Isabel Pombo Grégoire, Clémence Richetta, Laurène Meyniel-Schicklin, Sophie Borel, Fabrine Pradezynski, Olivier Diaz, Alexandre Deloire, Olga Azocar, Joël Baguet, Marc Le Breton, Philippe E. Mangeot, Vincent Navratil, Pierre-Emmanuel Joubert, Monique Flacher, Pierre-Olivier Vidalain, Patrice André, Vincent Lotteau, Martine Biard-Piechaczyk, Chantal Rabourdin-Combe, Mathias Faure

PLoS Pathog. 2011 Dec; 7(12): e1002422. Published online 2011 Dec 8. doi: 10.1371/journal.ppat.1002422

PMCID:: PMC3234227

Abstract Article PDF–1.9M

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 292504419.

ATG12 Conjugation to ATG3 Regulates Mitochondrial Homeostasis and Cell Death

Lilliana Radoshevich, Lyndsay Murrow, Nan Chen, Estefania Fernandez, Srirupa Roy, Christopher Fung, Jayanta Debnath

Cell. Author manuscript; available in PMC 2011 Aug 20.

Published in final edited form as: Cell. 2010 Aug 20; 142(4): 590–600. doi: 10.1016/j.cell.2010.07.018

PMCID:: PMC2925044

Abstract Article PDF–2.2M

Select item 290199820.

Network organization of the human autophagy system

Christian Behrends, Mathew E. Sowa, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2011 Jan 1.

Published in final edited form as: Nature. 2010 Jul 1; 466(7302): 68–76. Published online 2010 Jun 20. doi: 10.1038/nature09204

PMCID:: PMC2901998

Abstract Article PDF–1.4M

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