PMC Links for GEO Profiles (Select 8016031) - PMC

Inês Gomes Castro, Shawn P Shortill, Samantha Katarzyna Dziurdzik, Angela Cadou, Suriakarthiga Ganesan, Rosario Valenti, Yotam David, Michael Davey, Carsten Mattes, Ffion B Thomas, Reut Ester Avraham, Hadar Meyer, Amir Fadel, Emma J Fenech, Robert Ernst, Vanina Zaremberg, Tim P Levine, Christopher Stefan, Elizabeth Conibear, Maya Schuldiner

eLife. 2022; 11: e74602. Published online 2022 Nov 10. doi: 10.7554/eLife.74602

PMCID:: PMC9648973

Abstract Article PDF–8.0M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85710635.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 79236816.

The Srs2 helicase dampens DNA damage checkpoint by recycling RPA from chromatin

Nalini Dhingra, Sahiti Kuppa, Lei Wei, Nilisha Pokhrel, Silva Baburyan, Xiangzhou Meng, Edwin Antony, Xiaolan Zhao

Proc Natl Acad Sci U S A. 2021 Feb 23; 118(8): e2020185118. Published online 2021 Feb 18. doi: 10.1073/pnas.2020185118

PMCID:: PMC7923681

Abstract Article PDF–1.6M

Select item 62157137.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 56618858.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002549.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 559580810.

Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment

Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel

Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7

Correction in:: Sci Rep. 2018; 8: 2513.

PMCID:: PMC5595808

Abstract Article PDF–5.9M

Select item 376403611.

Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation

Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez

PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086

PMCID:: PMC3764036

Abstract Article PDF–496K

Select item 353790812.

Global Analysis of Yeast mRNPs

Sarah F. Mitchell, Saumya Jain, Meipei She, Roy Parker

Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 1.

Published in final edited form as: Nat Struct Mol Biol. 2013 Jan; 20(1): 127–133. Published online 2012 Dec 9. doi: 10.1038/nsmb.2468

PMCID:: PMC3537908

Abstract Article PDF–1.2M

Select item 325577913.

Cdc7-Dbf4 Is a Gene-Specific Regulator of Meiotic Transcription in Yeast

Hsiao-Chi Lo, Ryan C. Kunz, Xiangyu Chen, Allison Marullo, Steven P. Gygi, Nancy M. Hollingsworth

Mol Cell Biol. 2012 Jan; 32(2): 541–557. doi: 10.1128/MCB.06032-11

PMCID:: PMC3255779

Abstract Article PDF–2.3M

Select item 314779414.

The Duplicated Deacetylases Sir2 and Hst1 Subfunctionalized by Acquiring Complementary Inactivating Mutations

Cara A. Froyd, Laura N. Rusche

Mol Cell Biol. 2011 Aug; 31(16): 3351–3365. doi: 10.1128/MCB.05175-11

PMCID:: PMC3147794

Abstract Article PDF–1.5M

Select item 278404215.

Avoiding unscheduled transcription in shared promoters: Saccharomyces cerevisiae Sum1p represses the divergent gene pair SPS18-SPS19 through a midsporulation element (MSE)

Aner Gurvitz, Fumi Suomi, Hanspeter Rottensteiner, J Kalervo Hiltunen, Ian W Dawes

FEMS Yeast Res. 2009 Sep; 9(6): 821–831. Published online 2009 Jul 3. doi: 10.1111/j.1567-1364.2009.00527.x

PMCID:: PMC2784042

Abstract Article PDF–197K

Select item 258558816.

Control of replication initiation by the Sum1/Rfm1/Hst1 histone deacetylase

Jan M Weber, Horst Irlbacher, Ann E Ehrenhofer-Murray

BMC Mol Biol. 2008; 9: 100. Published online 2008 Nov 6. doi: 10.1186/1471-2199-9-100

PMCID:: PMC2585588

Abstract Article PDF–1.3M

Select item 161994217.

Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer

Julie Huang, Ilana L. Brito, Judit Villén, Steven P. Gygi, Angelika Amon, Danesh Moazed

Genes Dev. 2006 Oct 15; 20(20): 2887–2901. doi: 10.1101/gad.1472706

PMCID:: PMC1619942

Abstract Article PDF–1.1M

Select item 118234318.

Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression

Horst Irlbacher, Jacqueline Franke, Thomas Manke, Martin Vingron, Ann E. Ehrenhofer-Murray

Genes Dev. 2005 Aug 1; 19(15): 1811–1822. doi: 10.1101/gad.334805

PMCID:: PMC1182343

Abstract Article PDF–391K

Select item 53903419.

Morphogenetic Pathway of Spore Wall Assembly in Saccharomyces cerevisiae

Alison Coluccio, Edith Bogengruber, Michael N. Conrad, Michael E. Dresser, Peter Briza, Aaron M. Neiman

Eukaryot Cell. 2004 Dec; 3(6): 1464–1475. doi: 10.1128/EC.3.6.1464-1475.2004

PMCID:: PMC539034

Abstract Article PDF–610K

Select item 42325120.

A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length

Syed H. Askree, Tal Yehuda, Sarit Smolikov, Raya Gurevich, Joshua Hawk, Carrie Coker, Anat Krauskopf, Martin Kupiec, Michael J. McEachern

Proc Natl Acad Sci U S A. 2004 Jun 8; 101(23): 8658–8663. Published online 2004 May 25. doi: 10.1073/pnas.0401263101

PMCID:: PMC423251

Abstract Article PDF–300K

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