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Items: 12

1.
Bcd1p controls RNA loading of the core protein Nop58 during C/D box snoRNP biogenesis
Arnaud Paul, Decebal Tiotiu, Benoît Bragantini, Hélène Marty, Bruno Charpentier, Séverine Massenet, Stéphane Labialle
RNA. 2019 Apr; 25(4): 496–506. doi: 10.1261/rna.067967.118
PMCID:
PMC6426285
ArticlePDF–1.9M
2.
Transcriptome-wide mapping reveals widespread dynamic regulated pseudouridylation of ncRNA and mRNA
Schraga Schwartz, Douglas A. Bernstein, Maxwell R. Mumbach, Marko Jovanovic, Rebecca H. Herbst, Brian X. León-Ricardo, Jesse M. Engreitz, Mitchell Guttman, Rahul Satija, Eric S. Lander, Gerald Fink, Aviv Regev
Cell. Author manuscript; available in PMC 2015 Sep 25.
Published in final edited form as: Cell. 2014 Sep 25; 159(1): 148–162. Published online 2014 Sep 11. doi: 10.1016/j.cell.2014.08.028
PMCID:
PMC4180118
ArticlePDF–1.6M
3.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
ArticlePDF–1.7M
4.
Effects of the Paf1 Complex and Histone Modifications on snoRNA 3′-End Formation Reveal Broad and Locus-Specific Regulation
Brett N. Tomson, Elia M. Crisucci, Lawrence E. Heisler, Marinella Gebbia, Corey Nislow, Karen M. Arndt
Mol Cell Biol. 2013 Jan; 33(1): 170–182. doi: 10.1128/MCB.01233-12
PMCID:
PMC3536304
ArticlePDF–1.5M
5.
Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1
Tyler J. Creamer, Miranda M. Darby, Nuttara Jamonnak, Paul Schaughency, Haiping Hao, Sarah J. Wheelan, Jeffry L. Corden
PLoS Genet. 2011 Oct; 7(10): e1002329. Published online 2011 Oct 20. doi: 10.1371/journal.pgen.1002329
PMCID:
PMC3197677
ArticlePDF–1.3M
6.
Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface
Bon-Kyung Koo, Chin-Ju Park, Cesar F. Fernandez, Nicholas Chim, Yi Ding, Guillaume Chanfreau, Juli Feigon
J Mol Biol. Author manuscript; available in PMC 2012 Sep 2.
Published in final edited form as: J Mol Biol. 2011 Sep 2; 411(5): 927–942. Published online 2011 Jun 25. doi: 10.1016/j.jmb.2011.06.022
PMCID:
PMC3156286
ArticlePDF–3.5M
7.
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
Dorota Piekna-Przybylska, Wayne A. Decatur, Maurille J. Fournier
RNA. 2007 Mar; 13(3): 305–312. doi: 10.1261/rna.373107
PMCID:
PMC1800513
ArticlePDF–745K
8.
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae
CLAIRE TORCHET, GWENAËL BADIS, FRÉDÉRIC DEVAUX, GINNY COSTANZO, MICHEL WERNER, ALAIN JACQUIER
RNA. 2005 Jun; 11(6): 928–938. doi: 10.1261/rna.2100905
PMCID:
PMC1370777
ArticlePDF–592K
9.
Cotranscriptional Recruitment of the Pseudouridylsynthetase Cbf5p and of the RNA Binding Protein Naf1p during H/ACA snoRNP Assembly
Pok Kwan Yang, Coralie Hoareau, Carine Froment, Bernard Monsarrat, Yves Henry, Guillaume Chanfreau
Mol Cell Biol. 2005 Apr; 25(8): 3295–3304. doi: 10.1128/MCB.25.8.3295-3304.2005
PMCID:
PMC1069627
ArticlePDF–414K
10.
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
Peter Schattner, Wayne A. Decatur, Carrie A. Davis, Manuel Ares, Jr, Maurille J. Fournier, Todd M. Lowe
Nucleic Acids Res. 2004; 32(14): 4281–4296. Published online 2004 Aug 11. doi: 10.1093/nar/gkh768
PMCID:
PMC514388
ArticlePDF–709K
11.
SnR31, snR32, and snR33: three novel, non-essential snRNAs from Saccharomyces cerevisiae.
A G Balakin, G S Schneider, M S Corbett, J Ni, M J Fournier
Nucleic Acids Res. 1993 Nov 25; 21(23): 5391–5397. doi: 10.1093/nar/21.23.5391
PMCID:
PMC310576
ArticlePDF–1.7M
12.
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae.
D A Samarsky, M J Fournier
Nucleic Acids Res. 1999 Jan 1; 27(1): 161–164. doi: 10.1093/nar/27.1.161
PMCID:
PMC148121
SummaryPDF–517K

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