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Items: 1 to 20 of 63

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
AbstractArticlePDF–5.9M
4.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
5.
Exploring the consequences of redirecting an exocytic Rab onto endocytic vesicles
Xia Li, Dongmei Liu, Eric Griffis, Peter Novick
Mol Biol Cell. 2023 May 1; 34(5): ar38. Published online 2023 Apr 11. doi: 10.1091/mbc.E23-01-0037
PMCID:
PMC10162416
AbstractArticlePDF–9.3M
6.
Allosteric regulation of exocyst: Discrete activation of tethering by two spatial signals
Brittany K. Miller, Guendalina Rossi, Sara Hudson, David Cully, Richard W. Baker, Patrick Brennwald
J Cell Biol. 2023 Mar 6; 222(3): e202206108. Published online 2023 Feb 2. doi: 10.1083/jcb.202206108
PMCID:
PMC9929655
AbstractArticlePDF–6.1M
7.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
8.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
9.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
10.
Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site
Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook
Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615
PMCID:
PMC8934651
AbstractArticlePDF–4.4M
11.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
12.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
13.
Integrative structure and function of the yeast exocyst complex
Sai J. Ganesan, Michael J. Feyder, Ilan E. Chemmama, Fei Fang, Michael P. Rout, Brian T. Chait, Yi Shi, Mary Munson, Andrej Sali
Protein Sci. 2020 Jun; 29(6): 1486–1501. Published online 2020 May 1. doi: 10.1002/pro.3863
PMCID:
PMC7255525
AbstractArticlePDF–6.8M
14.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
15.
Two subunits of the exocyst, Sec3p and Exo70p, can function exclusively on the plasma membrane
Dongmei Liu, Xia Li, David Shen, Peter Novick
Mol Biol Cell. 2018 Mar 15; 29(6): 736–750. doi: 10.1091/mbc.E17-08-0518
PMCID:
PMC6003224
AbstractArticlePDF–2.6M
16.
Cryo-EM Structure of the Exocyst Complex
Kunrong Mei, Yan Li, Shaoxiao Wang, Guangcan Shao, Jia Wang, Yuehe Ding, Guangzuo Luo, Peng Yue, Jun-Jie Liu, Xinquan Wang, Meng-Qiu Dong, Hong-Wei Wang, Wei Guo
Nat Struct Mol Biol. Author manuscript; available in PMC 2018 Jul 15.
Published in final edited form as: Nat Struct Mol Biol. 2018 Feb; 25(2): 139–146. Published online 2018 Jan 15. doi: 10.1038/s41594-017-0016-2
Correction in:
Nat Struct Mol Biol. 2018 Nov 5
PMCID:
PMC5971111
AbstractArticlePDF–3.7M
17.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
18.
Exploring Quantitative Yeast Phenomics with Single Cell Analysis of DNA Damage Foci
Erin B. Styles, Karen J. Founk, Lee A. Zamparo, Tina L. Sing, Dogus Altintas, Cyril Ribeyre, Virginie Ribaud, Jacques Rougemont, David Mayhew, Michael Costanzo, Matej Usaj, Adrian J. Verster, Elizabeth N. Koch, Daniele Novarina, Marco Graf, Brian Luke, Marco Muzi-Falconi, Chad L. Myers, Robi David Mitra, David Shore, Grant W. Brown, Zhaolei Zhang, Charles Boone, Brenda J. Andrews
Cell Syst. Author manuscript; available in PMC 2017 Nov 16.
Published in final edited form as: Cell Syst. 2016 Sep 28; 3(3): 264–277.e10. Published online 2016 Sep 8. doi: 10.1016/j.cels.2016.08.008
PMCID:
PMC5689480
AbstractArticlePDF–2.9M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
Subgenic Pol II interactomes identify region‐specific transcription elongation regulators
Kevin M Harlen, L Stirling Churchman
Mol Syst Biol. 2017 Jan; 13(1): 900. Published online 2017 Jan 2. doi: 10.15252/msb.20167279
PMCID:
PMC5293154
AbstractArticlePDF–2.3M

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