PMC Links for GEO Profiles (Select 82076444) - PMC

Select item 76957201.

Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome

He Fang, Giancarlo Bonora, Jordan P. Lewandowski, Jitendra Thakur, Galina N. Filippova, Steven Henikoff, Jay Shendure, Zhijun Duan, John L. Rinn, Xinxian Deng, William S. Noble, Christine M. Disteche

Nat Commun. 2020; 11: 6053. Published online 2020 Nov 27. doi: 10.1038/s41467-020-19879-3

PMCID:: PMC7695720

Abstract Article PDF–3.4M

Select item 68609892.

In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation

Daniel Andergassen, Zachary D Smith, Jordan P Lewandowski, Chiara Gerhardinger, Alexander Meissner, John L Rinn

eLife. 2019; 8: e47214. Published online 2019 Nov 18. doi: 10.7554/eLife.47214

PMCID:: PMC6860989

Abstract Article PDF–1.0M

Select item 68539883.

The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis

Jordan P. Lewandowski, James C. Lee, Taeyoung Hwang, Hongjae Sunwoo, Jill M. Goldstein, Abigail F. Groff, Nydia P. Chang, William Mallard, Adam Williams, Jorge Henao-Meija, Richard A. Flavell, Jeannie T. Lee, Chiara Gerhardinger, Amy J. Wagers, John L. Rinn

Nat Commun. 2019; 10: 5137. Published online 2019 Nov 13. doi: 10.1038/s41467-019-12970-4

PMCID:: PMC6853988

Abstract Article PDF–1.4M

Select item 63514994.

A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b Signaling on Epithelial Tip Progenitor Cells During Early Mouse Lung Branching Morphogenesis

Matthew R. Jones, Salma Dilai, Arun Lingampally, Cho-Ming Chao, Soula Danopoulos, Gianni Carraro, Regina Mukhametshina, Jochen Wilhelm, Eveline Baumgart-Vogt, Denise Al Alam, Chengshui Chen, Parviz Minoo, Jin San Zhang, Saverio Bellusci

Front Genet. 2018; 9: 746. Published online 2019 Jan 23. doi: 10.3389/fgene.2018.00746

PMCID:: PMC6351499

Abstract Article PDF–5.6M

Select item 58991545.

A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus

A. Rasim Barutcu, Philipp G. Maass, Jordan P. Lewandowski, Catherine L. Weiner, John L. Rinn

Nat Commun. 2018; 9: 1444. Published online 2018 Apr 13. doi: 10.1038/s41467-018-03614-0

PMCID:: PMC5899154

Abstract Article PDF–2.4M

Select item 46268686.

Regulatory networks of non-coding RNAs in brown/beige adipogenesis

Shaohai Xu, Peng Chen, Lei Sun

Biosci Rep. 2015 Oct; 35(5): e00262. Prepublished online 2015 Aug 17. Published online 2015 Oct 30. doi: 10.1042/BSR20150155

PMCID:: PMC4626868

Abstract Article PDF–935K

Select item 45614927.

Regulation of the ESC transcriptome by nuclear long noncoding RNAs

Jan H. Bergmann, Jingjing Li, Mélanie A. Eckersley-Maslin, Frank Rigo, Susan M. Freier, David L. Spector

Genome Res. 2015 Sep; 25(9): 1336–1346. doi: 10.1101/gr.189027.114

PMCID:: PMC4561492

Abstract Article PDF–630K

Select item 43917308.

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation

Fan Yang, Xinxian Deng, Wenxiu Ma, Joel B Berletch, Natalia Rabaia, Gengze Wei, James M Moore, Galina N Filippova, Jun Xu, Yajuan Liu, William S Noble, Jay Shendure, Christine M Disteche

Genome Biol. 2015; 16(1): 52. Published online 2015 Mar 12. doi: 10.1186/s13059-015-0618-0

PMCID:: PMC4391730

Abstract Article PDF–1.7M

Select item 39503339.

Topological Organization of Multi-chromosomal Regions by Firre

Ezgi Hacisuleyman, Loyal A. Goff, Cole Trapnell, Adam Williams, Jorge Henao-Mejia, Lei Sun, Patrick McClanahan, David G. Hendrickson, Martin Sauvageau, David R. Kelley, Michael Morse, Jesse Engreitz, Eric S. Lander, Mitch Guttman, Harvey F. Lodish, Richard Flavell, Arjun Raj, John L. Rinn

Nat Struct Mol Biol. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Nat Struct Mol Biol. 2014 Feb; 21(2): 198–206. Published online 2014 Jan 26. doi: 10.1038/nsmb.2764

PMCID:: PMC3950333

Abstract Article PDF–2.1M

Select item 302253410.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 255627011.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 31099212.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098013.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355414.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 13924115.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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