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Items: 1 to 20 of 24

1.
Deletion of a conserved genomic region associated with adolescent idiopathic scoliosis leads to vertebral rotation in mice
Jeremy McCallum-Loudeac, Edward Moody, Jack Williams, Georgia Johnstone, Kathleen J Sircombe, Andrew N Clarkson, Megan J Wilson
Hum Mol Genet. 2024 May 1; 33(9): 787–801. Published online 2024 Jan 27. doi: 10.1093/hmg/ddae011
PMCID:
PMC11031364
AbstractArticlePDF–1.8M
2.
Combinatorial effects on gene expression at the Lbx1/Fgf8 locus resolve split-hand/foot malformation type 3
Giulia Cova, Juliane Glaser, Robert Schöpflin, Cesar Augusto Prada-Medina, Salaheddine Ali, Martin Franke, Rita Falcone, Miriam Federer, Emanuela Ponzi, Romina Ficarella, Francesca Novara, Lars Wittler, Bernd Timmermann, Mattia Gentile, Orsetta Zuffardi, Malte Spielmann, Stefan Mundlos
Nat Commun. 2023; 14: 1475. Published online 2023 Mar 17. doi: 10.1038/s41467-023-37057-z
Correction in:
Nat Commun. 2023; 14: 2839.
PMCID:
PMC10020157
AbstractArticlePDF–3.8M
3.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
4.
Deployment of DNA polymerases beta and lambda in single-nucleotide and multinucleotide pathways of mammalian base excision DNA repair
Upasna Thapar, Bruce Demple
DNA Repair (Amst) Author manuscript; available in PMC 2020 Apr 1.
Published in final edited form as: DNA Repair (Amst). 2019 Apr; 76: 11–19. Published online 2019 Feb 4. doi: 10.1016/j.dnarep.2019.02.001
PMCID:
PMC6464370
AbstractArticlePDF–1.3M
5.
Increased neuronal death and disturbed axonal growth in the Polμ-deficient mouse embryonic retina
Jimena Baleriola, Noemí Álvarez-Lindo, Pedro de la Villa, Antonio Bernad, Luis Blanco, Teresa Suárez, Enrique J. de la Rosa
Sci Rep. 2016; 6: 25928. Published online 2016 May 13. doi: 10.1038/srep25928
PMCID:
PMC4865816
AbstractArticlePDF–2.6M
6.
Essential role for polymerase specialization in cellular nonhomologous end joining
John M. Pryor, Crystal A. Waters, Ana Aza, Kenjiro Asagoshi, Christina Strom, Piotr A. Mieczkowski, Luis Blanco, Dale A. Ramsden
Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33): E4537–E4545. Published online 2015 Aug 3. doi: 10.1073/pnas.1505805112
PMCID:
PMC4547266
AbstractArticlePDF–1.1M
7.
Structure–Function Studies of DNA Polymerase λ
Katarzyna Bebenek, Lars C. Pedersen, Thomas A. Kunkel
Biochemistry. 2014 May 6; 53(17): 2781–2792. Published online 2014 Apr 10. doi: 10.1021/bi4017236
PMCID:
PMC4018081
AbstractArticlePDF–4.4M
8.
DNA polymerases β and λ do not directly affect Ig variable region somatic hypermutation although their absence reduces the frequency of mutations
Carol E. Schrader, Erin K. Linehan, Anna J. Ucher, Barbara Bertocci, Janet Stavnezer
DNA Repair (Amst) Author manuscript; available in PMC 2014 Dec 1.
Published in final edited form as: DNA Repair (Amst). 2013 Dec; 12(12): 1087–1093. Published online 2013 Sep 29. doi: 10.1016/j.dnarep.2013.09.002
PMCID:
PMC4000569
AbstractArticlePDF–541K
9.
DNA polymerase δ-interacting protein 2 is a processivity factor for DNA polymerase λ during 8-oxo-7,8-dihydroguanine bypass
Giovanni Maga, Emmanuele Crespan, Enni Markkanen, Ralph Imhof, Antonia Furrer, Giuseppe Villani, Ulrich Hübscher, Barbara van Loon
Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47): 18850–18855. Published online 2013 Nov 4. doi: 10.1073/pnas.1308760110
PMCID:
PMC3839753
AbstractArticlePDF–917K
10.
A switch between DNA polymerases δ and λ promotes error-free bypass of 8-oxo-G lesions
Enni Markkanen, Benoît Castrec, Giuseppe Villani, Ulrich Hübscher
Proc Natl Acad Sci U S A. 2012 Dec 11; 109(50): 20401–20406. Published online 2012 Nov 21. doi: 10.1073/pnas.1211532109
PMCID:
PMC3528542
AbstractArticlePDF–781K
11.
Involvement of Werner syndrome protein in MUTYH-mediated repair of oxidative DNA damage
Radhakrishnan Kanagaraj, Prasanna Parasuraman, Boris Mihaljevic, Barbara van Loon, Kamila Burdova, Christiane König, Antonia Furrer, Vilhelm A. Bohr, Ulrich Hübscher, Pavel Janscak
Nucleic Acids Res. 2012 Sep; 40(17): 8449–8459. Published online 2012 Jun 29. doi: 10.1093/nar/gks648
PMCID:
PMC3458577
AbstractArticlePDF–5.8M
12.
Regulation of oxidative DNA damage repair by DNA polymerase λ and MutYH by cross-talk of phosphorylation and ubiquitination
Enni Markkanen, Barbara van Loon, Elena Ferrari, Jason L. Parsons, Grigory L. Dianov, Ulrich Hübscher
Proc Natl Acad Sci U S A. 2012 Jan 10; 109(2): 437-442. Published online 2011 Dec 27. doi: 10.1073/pnas.1110449109
PMCID:
PMC3258598
AbstractArticlePDF–930K
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
DNA Polymerases β and λ Mediate Overlapping and Independent Roles in Base Excision Repair in Mouse Embryonic Fibroblasts
Elena K. Braithwaite, Padmini S. Kedar, Deborah J. Stumpo, Barbara Bertocci, Jonathan H. Freedman, Leona D. Samson, Samuel H. Wilson
PLoS One. 2010; 5(8): e12229. Published online 2010 Aug 18. doi: 10.1371/journal.pone.0012229
PMCID:
PMC2923601
AbstractArticlePDF–548K
15.
Interaction between DNA Polymerase λ and Anticancer Nucleoside Analogs
Miguel Garcia-Diaz, Michael S. Murray, Thomas A. Kunkel, Kai-ming Chou
J Biol Chem. 2010 May 28; 285(22): 16874–16879. Published online 2010 Mar 26. doi: 10.1074/jbc.M109.094391
PMCID:
PMC2878035
AbstractArticlePDF–1.6M
16.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
17.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
18.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
19.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
20.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K

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