PMC Links for GEO Profiles (Select 84709324) - PMC

Select item 88522191.

SCARF1-induced efferocytosis plays an immunomodulatory role in humans, and autoantibodies targeting SCARF1 are produced in patients with systemic lupus erythematosus

April M. Jorge, Taotao Lao, Rachel Kim, Samantha Licciardi, Joseph ElKhoury, Andrew Luster, Terry K. Means, Zaida G. Ramirez-Ortiz

J Immunol. Author manuscript; available in PMC 2023 Feb 15.

Published in final edited form as: J Immunol. 2022 Feb 15; 208(4): 955–967. Published online 2022 Jan 26. doi: 10.4049/jimmunol.2100532

PMCID:: PMC8852219

Abstract Article PDF–1.9M

Select item 80851192.

Apoptotic cells in mouse blastocysts are eliminated by neighbouring blastomeres

Jozef Pisko, Alexandra Špirková, Štefan Čikoš, Lucia Olexiková, Veronika Kovaříková, Zuzana Šefčíková, Dušan Fabian

Sci Rep. 2021; 11: 9228. Published online 2021 Apr 29. doi: 10.1038/s41598-021-88752-0

PMCID:: PMC8085119

Abstract Article PDF–1.6M

Select item 79387703.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 66734404.

Analyzing Somatosensory Axon Projections with the Sensory Neuron-Specific Advillin Gene

Hiroshi Hasegawa, Sara Abbott, Bao-Xia Han, Yi Qi, Fan Wang

J Neurosci. 2007 Dec 26; 27(52): 14404–14414. doi: 10.1523/JNEUROSCI.4908-07.2007

PMCID:: PMC6673440

Abstract Article PDF–858K

Select item 43833385.

Scavenger Receptor SREC-I Mediated Entry of TLR4 into Lipid Microdomains and Triggered Inflammatory Cytokine Release in RAW 264.7 Cells upon LPS Activation

Ayesha Murshid, Jianlin Gong, Thomas Prince, Thiago J. Borges, Stuart K. Calderwood

PLoS One. 2015; 10(4): e0122529. Published online 2015 Apr 2. doi: 10.1371/journal.pone.0122529

PMCID:: PMC4383338

Abstract Article PDF–1.6M

Select item 41090546.

Hsp90 mediates Efficient Antigen Cross Presentation Through the Scavenger Receptor SREC-I

Ayesha Murshid, Jianlin Gong, Stuart K. Calderwood

J Immunol. Author manuscript; available in PMC 2014 Jul 24.

Published in final edited form as: J Immunol. 2010 Sep 1; 185(5): 2903–2917. Published online 2010 Aug 4. doi: 10.4049/jimmunol.0903635

PMCID:: PMC4109054

Abstract Article PDF–3.1M

Select item 37526987.

The scavenger receptor SCARF1 mediates apoptotic cell clearance and prevents autoimmunity

Zaida G. Ramirez-Ortiz, William F. Pendergraft, III, Amit Prasad, Michael H. Byrne, Tal Iram, Christopher J. Blanchette, Andrew D. Luster, Nir Hacohen, Joseph El Khoury, Terry K. Means

Nat Immunol. Author manuscript; available in PMC 2014 Mar 1.

Published in final edited form as: Nat Immunol. 2013 Sep; 14(9): 917–926. Published online 2013 Jul 28. doi: 10.1038/ni.2670

PMCID:: PMC3752698

Abstract Article PDF–1.8M

Select item 31780598.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 30225349.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 269912310.

Evolutionarily conserved recognition and innate immunity to fungal pathogens by the scavenger receptors SCARF1 and CD36

Terry K. Means, Eleftherios Mylonakis, Emmanouil Tampakakis, Richard A. Colvin, Edward Seung, Lindsay Puckett, Melissa F. Tai, Cameron R. Stewart, Read Pukkila-Worley, Suzanne E. Hickman, Kathryn J. Moore, Stephen B. Calderwood, Nir Hacohen, Andrew D. Luster, Joseph El Khoury

J Exp Med. 2009 Mar 16; 206(3): 637–653. doi: 10.1084/jem.20082109

PMCID:: PMC2699123

Abstract Article PDF–5.6M

Select item 31099211.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098012.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924113.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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