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Items: 19

1.
Arid5a mediates an IL-17-dependent pathway that drives autoimmunity but not antifungal host defense
Tiffany C. Taylor, Yang Li, De-Dong Li, Saikat Majumder, Mandy McGeachy, Partha S. Biswas, Sebastien Gingras, Sarah L. Gaffen
J Immunol. Author manuscript; available in PMC 2023 Sep 15.
Published in final edited form as: J Immunol. 2022 Aug 8 : ji2200132. Published online 2022 Aug 8. doi: 10.4049/jimmunol.2200132
PMCID:
PMC9492638
AbstractArticlePDF–1.0M
2.
Control of spinal motor neuron terminal differentiation through sustained Hoxc8 gene activity
Catarina Catela, Yihan Chen, Yifei Weng, Kailong Wen, Paschalis Kratsios
eLife. 2022; 11: e70766. Published online 2022 Mar 22. doi: 10.7554/eLife.70766
PMCID:
PMC8940177
AbstractArticlePDF–6.0M
3.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
4.
Feedback regulation of Arid5a and Ppar-γ2 maintains adipose tissue homeostasis
Jaya Prakash Chalise, Shigeru Hashimoto, Gyanu Parajuli, Sujin Kang, Shailendra Kumar Singh, Yohannes Gemechu, Hozaifa Metwally, Kishan Kumar Nyati, Praveen Kumar Dubey, Mohammad Mahabub-Uz Zaman, Yasuharu Nagahama, Hanieh Hamza, Kazuya Masuda, Tadamitsu Kishimoto
Proc Natl Acad Sci U S A. 2019 Jul 23; 116(30): 15128–15133. Published online 2019 Jul 9. doi: 10.1073/pnas.1906712116
PMCID:
PMC6660722
AbstractArticlePDF–1.2M
5.
IL-17 integrates multiple self-reinforcing, feed-forward mechanisms through the RNA-binding protein Arid5a
Nilesh Amatya, Erin E. Childs, J. Agustin Cruz, Felix E. Y. Aggor, Abhishek V. Garg, Andrea J. Berman, Johann E. Gudjonsson, Ulus Atasoy, Sarah L. Gaffen
Sci Signal. Author manuscript; available in PMC 2019 Oct 9.
Published in final edited form as: Sci Signal. 2018 Oct 9; 11(551): eaat4617. Published online 2018 Oct 9. doi: 10.1126/scisignal.aat4617
PMCID:
PMC6188668
AbstractArticlePDF–2.0M
6.
Regulation of inflammatory responses by dynamic subcellular localization of RNA-binding protein Arid5a
Mitsuru Higa, Masahiro Oka, Yoshitaka Fujihara, Kazuya Masuda, Yoshihiro Yoneda, Tadamitsu Kishimoto
Proc Natl Acad Sci U S A. 2018 Feb 6; 115(6): E1214–E1220. Published online 2018 Jan 22. doi: 10.1073/pnas.1719921115
PMCID:
PMC5819453
AbstractArticlePDF–1.0M
7.
TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a
Kishan K. Nyati, Kazuya Masuda, Mohammad Mahabub-Uz Zaman, Praveen K. Dubey, David Millrine, Jaya P. Chalise, Mitsuru Higa, Songling Li, Daron M. Standley, Kazunobu Saito, Hamza Hanieh, Tadamitsu Kishimoto
Nucleic Acids Res. 2017 Mar 17; 45(5): 2687–2703. Published online 2017 Feb 7. doi: 10.1093/nar/gkx064
PMCID:
PMC5389518
AbstractArticlePDF–8.4M
8.
Arid5a exacerbates IFN-γ–mediated septic shock by stabilizing T-bet mRNA
Mohammad Mahabub-Uz Zaman, Kazuya Masuda, Kishan Kumar Nyati, Praveen Kumar Dubey, Barry Ripley, Kai Wang, Jaya Prakash Chalise, Mitsuru Higa, Hamza Hanieh, Tadamitsu Kishimoto
Proc Natl Acad Sci U S A. 2016 Oct 11; 113(41): 11543–11548. Published online 2016 Sep 26. doi: 10.1073/pnas.1613307113
PMCID:
PMC5068254
AbstractArticlePDF–1.1M
9.
Arid5a regulates naive CD4+ T cell fate through selective stabilization of Stat3 mRNA
Kazuya Masuda, Barry Ripley, Kishan Kumar Nyati, Praveen Kumar Dubey, Mohammad Mahabub-Uz Zaman, Hamza Hanieh, Mitsuru Higa, Kazuo Yamashita, Daron M. Standley, Tsukasa Mashima, Masato Katahira, Toru Okamoto, Yoshiharu Matsuura, Osamu Takeuchi, Tadamitsu Kishimoto
J Exp Med. 2016 Apr 4; 213(4): 605–619. doi: 10.1084/jem.20151289
PMCID:
PMC4821647
AbstractArticlePDF–2.7M
10.
Arid5a controls IL-6 mRNA stability, which contributes to elevation of IL-6 level in vivo
Kazuya Masuda, Barry Ripley, Riko Nishimura, Takashi Mino, Osamu Takeuchi, Go Shioi, Hiroshi Kiyonari, Tadamitsu Kishimoto
Proc Natl Acad Sci U S A. 2013 Jun 4; 110(23): 9409–9414. Published online 2013 May 15. doi: 10.1073/pnas.1307419110
PMCID:
PMC3677444
AbstractArticlePDF–797K
11.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
12.
Arid5a cooperates with Sox9 to stimulate chondrocyte-specific transcription
Katsuhiko Amano, Kenji Hata, Shuji Muramatsu, Makoto Wakabayashi, Yoko Takigawa, Koichiro Ono, Masako Nakanishi, Rikako Takashima, Mikihiko Kogo, Akio Matsuda, Riko Nishimura, Toshiyuki Yoneda
Mol Biol Cell. 2011 Apr 15; 22(8): 1300–1311. doi: 10.1091/mbc.E10-07-0566
PMCID:
PMC3078073
AbstractArticlePDF–2.6M
13.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
14.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
15.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
16.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
17.
GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Axel Visel, Christina Thaller, Gregor Eichele
Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D552–D556. doi: 10.1093/nar/gkh029
PMCID:
PMC308763
AbstractArticlePDF–253K
18.
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands
Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100
Correction in:
Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.
PMCID:
PMC283554
AbstractArticlePDF–481K
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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