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Items: 1 to 20 of 39

1.
Potency of CRISPR-Cas Antifungals Is Enhanced by Cotargeting DNA Repair and Growth Regulatory Machinery at the Genetic Level
Brian J. Mendoza, Xianliang Zheng, Jared C. Clements, Christopher Cotter, Cong T. Trinh
ACS Infect Dis. 2023 Dec 8; 9(12): 2494–2503. Published online 2023 Nov 13. doi: 10.1021/acsinfecdis.3c00342
PMCID:
PMC10714396
AbstractArticlePDF–4.4M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication
Jessica S. Williams, Percy P. Tumbale, Mercedes E. Arana, Julian A. Rana, R. Scott Williams, Thomas A. Kunkel
Nat Commun. 2021; 12: 482. Published online 2021 Jan 20. doi: 10.1038/s41467-020-20800-1
PMCID:
PMC7817679
AbstractArticlePDF–2.7M
4.
No-Go Decay mRNA cleavage in the ribosome exit tunnel produces 5′-OH ends phosphorylated by Trl1
Albertas Navickas, Sébastien Chamois, Rénette Saint-Fort, Julien Henri, Claire Torchet, Lionel Benard
Nat Commun. 2020; 11: 122. Published online 2020 Jan 8. doi: 10.1038/s41467-019-13991-9
PMCID:
PMC6949252
AbstractArticlePDF–2.7M
5.
tRNA ligase structure reveals kinetic competition between non-conventional mRNA splicing and mRNA decay
Jirka Peschek, Peter Walter
eLife. 2019; 8: e44199. Published online 2019 Jun 25. doi: 10.7554/eLife.44199
PMCID:
PMC6592678
AbstractArticlePDF–2.6M
6.
Multiple decay events target HAC1 mRNA during splicing to regulate the unfolded protein response
Patrick D Cherry, Sally E Peach, Jay R Hesselberth
eLife. 2019; 8: e42262. Published online 2019 Mar 15. doi: 10.7554/eLife.42262
PMCID:
PMC6456296
AbstractArticlePDF–7.0M
7.
Genetic bypass of essential RNA repair enzymes in budding yeast
Patrick D. Cherry, Laura K. White, Kerri York, Jay R. Hesselberth
RNA. 2018 Mar; 24(3): 313–323. doi: 10.1261/rna.061788.117
PMCID:
PMC5824351
AbstractArticlePDF–7.0M
8.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
9.
Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase
Barbara S. Remus, Yehuda Goldgur, Stewart Shuman
Nucleic Acids Res. 2017 Dec 15; 45(22): 12945–12953. Published online 2017 Nov 20. doi: 10.1093/nar/gkx1159
PMCID:
PMC5728400
AbstractArticlePDF–5.5M
10.
Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae
Fernando A. Gonzales-Zubiate, Ellen K. Okuda, Julia P. C. Da Cunha, Carla Columbano Oliveira
J Biol Chem. 2017 Jul 21; 292(29): 12267–12284. Published online 2017 May 24. doi: 10.1074/jbc.M116.772376
PMCID:
PMC5519375
AbstractArticlePDF–3.2M
11.
Structural similarities and functional differences clarify evolutionary relationships between tRNA healing enzymes and the myelin enzyme CNPase
Gopinath Muruganandam, Arne Raasakka, Matti Myllykoski, Inari Kursula, Petri Kursula
BMC Biochem. 2017; 18: 7. Published online 2017 May 16. doi: 10.1186/s12858-017-0084-2
PMCID:
PMC5434554
AbstractArticlePDF–2.7M
12.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
13.
The Saccharomyces cerevisiae Dna2 can function as a sole nuclease in the processing of Okazaki fragments in DNA replication
Maryna Levikova, Petr Cejka
Nucleic Acids Res. 2015 Sep 18; 43(16): 7888–7897. Published online 2015 Jul 14. doi: 10.1093/nar/gkv710
PMCID:
PMC4652754
AbstractArticlePDF–3.1M
14.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
15.
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation
Lydia M. Castelli, David Talavera, Christopher J. Kershaw, Sarah S. Mohammad-Qureshi, Joseph L. Costello, William Rowe, Paul F. G. Sims, Christopher M. Grant, Simon J. Hubbard, Mark P. Ashe, Graham D. Pavitt
PLoS Genet. 2015 May; 11(5): e1005233. Published online 2015 May 14. doi: 10.1371/journal.pgen.1005233
PMCID:
PMC4431810
AbstractArticlePDF–5.5M
16.
Error-free and mutagenic processing of topoisomerase 1-provoked damage at genomic ribonucleotides
Justin L Sparks, Peter M Burgers
EMBO J. 2015 May 5; 34(9): 1259–1269. Published online 2015 Mar 17. doi: 10.15252/embj.201490868
PMCID:
PMC4426484
AbstractArticlePDF–1.2M
17.
Sequential switching of binding partners on PCNA during in vitro Okazaki fragment maturation
Daniel Dovrat, Joseph L. Stodola, Peter M. J. Burgers, Amir Aharoni
Proc Natl Acad Sci U S A. 2014 Sep 30; 111(39): 14118–14123. Published online 2014 Sep 16. doi: 10.1073/pnas.1321349111
PMCID:
PMC4191785
AbstractArticlePDF–1.2M
18.
Healing for destruction: tRNA intron degradation in yeast is a two-step cytoplasmic process catalyzed by tRNA ligase Rlg1 and 5′-to-3′ exonuclease Xrn1
Jingyan Wu, Anita K. Hopper
Genes Dev. 2014 Jul 15; 28(14): 1556–1561. doi: 10.1101/gad.244673.114
PMCID:
PMC4102763
AbstractArticlePDF–580K
19.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
AbstractArticlePDF–1.7M
20.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M

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